Strain Fitness in Escherichia coli BL21 around ECD_r00011

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03641 and ECD_r00011 are separated by 480 nucleotidesECD_r00011 and ECD_t00064 are separated by 85 nucleotidesECD_t00064 and ECD_r00012 are separated by 184 nucleotides ECD_03641: ECD_03641 - putative transcriptional regulator, at 3,830,882 to 3,831,574 _03641 ECD_r00011: ECD_r00011 - 16S ribosomal RNA, at 3,832,055 to 3,833,596 _r00011 ECD_t00064: ECD_t00064 - tRNA-Glu, at 3,833,682 to 3,833,757 _t00064 ECD_r00012: ECD_r00012 - 23S ribosomal RNA, at 3,833,942 to 3,836,847 _r00012 Position (kb) 3832 3833 3834Strain fitness (log2 ratio) -2 -1 0 1 2at 3831.082 kb on - strand, within ECD_03641at 3831.082 kb on - strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.143 kb on + strand, within ECD_03641at 3831.169 kb on + strand, within ECD_03641at 3831.215 kb on + strand, within ECD_03641at 3831.215 kb on + strand, within ECD_03641at 3831.241 kb on + strand, within ECD_03641at 3831.241 kb on + strand, within ECD_03641at 3831.242 kb on - strand, within ECD_03641at 3831.242 kb on - strand, within ECD_03641at 3831.248 kb on - strand, within ECD_03641at 3831.484 kb on - strand, within ECD_03641at 3831.484 kb on - strand, within ECD_03641at 3831.529 kb on - strandat 3831.529 kb on - strandat 3831.552 kb on - strandat 3831.566 kb on + strandat 3831.575 kb on + strandat 3831.575 kb on + strandat 3831.575 kb on + strandat 3831.576 kb on - strandat 3831.576 kb on - strandat 3831.579 kb on + strandat 3831.579 kb on + strandat 3831.579 kb on + strandat 3831.579 kb on + strandat 3831.580 kb on - strandat 3831.580 kb on - strandat 3831.597 kb on + strandat 3831.598 kb on - strandat 3831.607 kb on + strandat 3831.607 kb on + strandat 3831.607 kb on + strandat 3831.607 kb on + strandat 3831.608 kb on - strandat 3831.608 kb on - strandat 3831.610 kb on + strandat 3831.611 kb on - strandat 3831.663 kb on - strandat 3831.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,831,082 - ECD_03641 0.29 +1.7
3,831,082 - ECD_03641 0.29 +0.7
3,831,085 + ECD_03641 0.29 -1.5
3,831,085 + ECD_03641 0.29 -0.3
3,831,085 + ECD_03641 0.29 -0.6
3,831,085 + ECD_03641 0.29 -1.6
3,831,086 - ECD_03641 0.29 +0.2
3,831,086 - ECD_03641 0.29 -2.0
3,831,086 - ECD_03641 0.29 +0.2
3,831,086 - ECD_03641 0.29 +1.1
3,831,086 - ECD_03641 0.29 +0.0
3,831,086 - ECD_03641 0.29 +0.3
3,831,086 - ECD_03641 0.29 +2.5
3,831,143 + ECD_03641 0.38 +0.5
3,831,169 + ECD_03641 0.41 +1.0
3,831,215 + ECD_03641 0.48 -1.6
3,831,215 + ECD_03641 0.48 +0.1
3,831,241 + ECD_03641 0.52 +1.2
3,831,241 + ECD_03641 0.52 +0.8
3,831,242 - ECD_03641 0.52 -1.3
3,831,242 - ECD_03641 0.52 +1.1
3,831,248 - ECD_03641 0.53 +1.5
3,831,484 - ECD_03641 0.87 -0.7
3,831,484 - ECD_03641 0.87 -0.3
3,831,529 - -1.9
3,831,529 - -1.4
3,831,552 - +1.1
3,831,566 + +0.4
3,831,575 + +1.4
3,831,575 + +0.3
3,831,575 + -0.9
3,831,576 - -1.6
3,831,576 - -1.3
3,831,579 + +0.3
3,831,579 + -0.7
3,831,579 + -0.7
3,831,579 + +0.4
3,831,580 - -1.2
3,831,580 - +0.1
3,831,597 + -0.5
3,831,598 - -0.6
3,831,607 + -1.0
3,831,607 + -0.5
3,831,607 + +1.4
3,831,607 + +1.4
3,831,608 - -0.4
3,831,608 - +1.0
3,831,610 + +0.2
3,831,611 - +0.4
3,831,663 - -2.0
3,831,663 - +0.2

Or see this region's nucleotide sequence