Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03641 and ECD_r00011 are separated by 480 nucleotides ECD_r00011 and ECD_t00064 are separated by 85 nucleotides ECD_t00064 and ECD_r00012 are separated by 184 nucleotides
ECD_03641: ECD_03641 - putative transcriptional regulator, at 3,830,882 to 3,831,574
_03641
ECD_r00011: ECD_r00011 - 16S ribosomal RNA, at 3,832,055 to 3,833,596
_r00011
ECD_t00064: ECD_t00064 - tRNA-Glu, at 3,833,682 to 3,833,757
_t00064
ECD_r00012: ECD_r00012 - 23S ribosomal RNA, at 3,833,942 to 3,836,847
_r00012
Position (kb)
3832
3833
3834 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3831.082 kb on - strand, within ECD_03641 at 3831.082 kb on - strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.143 kb on + strand, within ECD_03641 at 3831.169 kb on + strand, within ECD_03641 at 3831.215 kb on + strand, within ECD_03641 at 3831.215 kb on + strand, within ECD_03641 at 3831.241 kb on + strand, within ECD_03641 at 3831.241 kb on + strand, within ECD_03641 at 3831.242 kb on - strand, within ECD_03641 at 3831.242 kb on - strand, within ECD_03641 at 3831.248 kb on - strand, within ECD_03641 at 3831.484 kb on - strand, within ECD_03641 at 3831.484 kb on - strand, within ECD_03641 at 3831.529 kb on - strand at 3831.529 kb on - strand at 3831.552 kb on - strand at 3831.566 kb on + strand at 3831.575 kb on + strand at 3831.575 kb on + strand at 3831.575 kb on + strand at 3831.576 kb on - strand at 3831.576 kb on - strand at 3831.579 kb on + strand at 3831.579 kb on + strand at 3831.579 kb on + strand at 3831.579 kb on + strand at 3831.580 kb on - strand at 3831.580 kb on - strand at 3831.597 kb on + strand at 3831.598 kb on - strand at 3831.607 kb on + strand at 3831.607 kb on + strand at 3831.607 kb on + strand at 3831.607 kb on + strand at 3831.608 kb on - strand at 3831.608 kb on - strand at 3831.610 kb on + strand at 3831.611 kb on - strand at 3831.663 kb on - strand at 3831.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,831,082 - ECD_03641 0.29 +1.7 3,831,082 - ECD_03641 0.29 +0.7 3,831,085 + ECD_03641 0.29 -1.5 3,831,085 + ECD_03641 0.29 -0.3 3,831,085 + ECD_03641 0.29 -0.6 3,831,085 + ECD_03641 0.29 -1.6 3,831,086 - ECD_03641 0.29 +0.2 3,831,086 - ECD_03641 0.29 -2.0 3,831,086 - ECD_03641 0.29 +0.2 3,831,086 - ECD_03641 0.29 +1.1 3,831,086 - ECD_03641 0.29 +0.0 3,831,086 - ECD_03641 0.29 +0.3 3,831,086 - ECD_03641 0.29 +2.5 3,831,143 + ECD_03641 0.38 +0.5 3,831,169 + ECD_03641 0.41 +1.0 3,831,215 + ECD_03641 0.48 -1.6 3,831,215 + ECD_03641 0.48 +0.1 3,831,241 + ECD_03641 0.52 +1.2 3,831,241 + ECD_03641 0.52 +0.8 3,831,242 - ECD_03641 0.52 -1.3 3,831,242 - ECD_03641 0.52 +1.1 3,831,248 - ECD_03641 0.53 +1.5 3,831,484 - ECD_03641 0.87 -0.7 3,831,484 - ECD_03641 0.87 -0.3 3,831,529 - -1.9 3,831,529 - -1.4 3,831,552 - +1.1 3,831,566 + +0.4 3,831,575 + +1.4 3,831,575 + +0.3 3,831,575 + -0.9 3,831,576 - -1.6 3,831,576 - -1.3 3,831,579 + +0.3 3,831,579 + -0.7 3,831,579 + -0.7 3,831,579 + +0.4 3,831,580 - -1.2 3,831,580 - +0.1 3,831,597 + -0.5 3,831,598 - -0.6 3,831,607 + -1.0 3,831,607 + -0.5 3,831,607 + +1.4 3,831,607 + +1.4 3,831,608 - -0.4 3,831,608 - +1.0 3,831,610 + +0.2 3,831,611 - +0.4 3,831,663 - -2.0 3,831,663 - +0.2
Or see this region's nucleotide sequence