Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04206 and ECD_04207 are separated by 478 nucleotides ECD_04207 and ECD_04208 are separated by 54 nucleotides ECD_04208 and ECD_04209 overlap by 82 nucleotides
ECD_04206: ECD_04206 - multidrug efflux system protein, at 4,476,566 to 4,477,798
_04206
ECD_04207: ECD_04207 - putative transposase, at 4,478,277 to 4,479,044
_04207
ECD_04208: ECD_04208 - IS1 protein InsA, at 4,479,099 to 4,479,374
_04208
ECD_04209: ECD_04209 - IS1 protein InsB, at 4,479,293 to 4,479,796
_04209
Position (kb)
4478
4479
4480 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4477.431 kb on + strand, within ECD_04206 at 4477.456 kb on + strand, within ECD_04206 at 4477.456 kb on + strand, within ECD_04206 at 4477.457 kb on - strand, within ECD_04206 at 4477.498 kb on + strand, within ECD_04206 at 4477.535 kb on - strand, within ECD_04206 at 4477.607 kb on + strand, within ECD_04206 at 4477.679 kb on + strand at 4477.680 kb on - strand at 4477.680 kb on - strand at 4477.687 kb on + strand at 4477.723 kb on - strand at 4477.916 kb on - strand at 4477.979 kb on + strand at 4477.980 kb on - strand at 4477.994 kb on + strand at 4478.010 kb on - strand at 4478.010 kb on - strand at 4478.051 kb on + strand at 4478.052 kb on - strand at 4478.052 kb on - strand at 4478.052 kb on - strand at 4478.061 kb on + strand at 4478.104 kb on - strand at 4478.371 kb on + strand, within ECD_04207 at 4478.410 kb on + strand, within ECD_04207 at 4478.410 kb on + strand, within ECD_04207 at 4478.411 kb on - strand, within ECD_04207 at 4478.411 kb on - strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.547 kb on - strand, within ECD_04207 at 4478.594 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.641 kb on + strand, within ECD_04207 at 4478.646 kb on + strand, within ECD_04207 at 4478.660 kb on + strand, within ECD_04207 at 4478.757 kb on - strand, within ECD_04207 at 4478.826 kb on - strand, within ECD_04207 at 4478.867 kb on - strand, within ECD_04207 at 4478.870 kb on - strand, within ECD_04207 at 4478.873 kb on - strand, within ECD_04207 at 4478.930 kb on - strand, within ECD_04207 at 4479.043 kb on - strand at 4479.043 kb on - strand at 4479.820 kb on + strand at 4479.868 kb on + strand at 4479.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 4,477,431 + ECD_04206 0.70 -0.2 4,477,456 + ECD_04206 0.72 +0.3 4,477,456 + ECD_04206 0.72 -1.0 4,477,457 - ECD_04206 0.72 -0.5 4,477,498 + ECD_04206 0.76 +0.5 4,477,535 - ECD_04206 0.79 -0.5 4,477,607 + ECD_04206 0.84 -1.7 4,477,679 + -0.0 4,477,680 - -2.5 4,477,680 - +0.2 4,477,687 + -1.3 4,477,723 - +1.4 4,477,916 - +0.1 4,477,979 + +1.5 4,477,980 - +2.9 4,477,994 + -0.2 4,478,010 - -0.7 4,478,010 - +0.3 4,478,051 + -0.5 4,478,052 - +0.3 4,478,052 - -0.7 4,478,052 - +0.0 4,478,061 + +0.2 4,478,104 - -0.2 4,478,371 + ECD_04207 0.12 -1.0 4,478,410 + ECD_04207 0.17 -0.8 4,478,410 + ECD_04207 0.17 +0.9 4,478,411 - ECD_04207 0.17 +0.4 4,478,411 - ECD_04207 0.17 +0.1 4,478,502 + ECD_04207 0.29 -0.3 4,478,502 + ECD_04207 0.29 -0.5 4,478,502 + ECD_04207 0.29 -0.8 4,478,502 + ECD_04207 0.29 +0.1 4,478,502 + ECD_04207 0.29 +0.3 4,478,503 - ECD_04207 0.29 +0.4 4,478,503 - ECD_04207 0.29 +0.5 4,478,503 - ECD_04207 0.29 +0.0 4,478,503 - ECD_04207 0.29 -0.5 4,478,503 - ECD_04207 0.29 +0.4 4,478,504 + ECD_04207 0.30 -1.0 4,478,504 + ECD_04207 0.30 -1.0 4,478,504 + ECD_04207 0.30 +0.1 4,478,504 + ECD_04207 0.30 +1.3 4,478,505 - ECD_04207 0.30 +0.2 4,478,505 - ECD_04207 0.30 +0.7 4,478,505 - ECD_04207 0.30 +0.2 4,478,505 - ECD_04207 0.30 +0.2 4,478,505 - ECD_04207 0.30 -0.8 4,478,505 - ECD_04207 0.30 -0.1 4,478,508 + ECD_04207 0.30 -0.8 4,478,508 + ECD_04207 0.30 +0.6 4,478,508 + ECD_04207 0.30 +0.2 4,478,508 + ECD_04207 0.30 +0.8 4,478,508 + ECD_04207 0.30 +0.4 4,478,508 + ECD_04207 0.30 +0.7 4,478,508 + ECD_04207 0.30 +0.4 4,478,508 + ECD_04207 0.30 +0.2 4,478,509 - ECD_04207 0.30 +0.2 4,478,509 - ECD_04207 0.30 -1.3 4,478,509 - ECD_04207 0.30 +0.2 4,478,509 - ECD_04207 0.30 +0.6 4,478,509 - ECD_04207 0.30 -1.9 4,478,547 - ECD_04207 0.35 +1.9 4,478,594 + ECD_04207 0.41 -0.3 4,478,596 + ECD_04207 0.42 -1.4 4,478,596 + ECD_04207 0.42 +1.4 4,478,596 + ECD_04207 0.42 -0.5 4,478,596 + ECD_04207 0.42 -0.3 4,478,596 + ECD_04207 0.42 +0.2 4,478,596 + ECD_04207 0.42 +0.0 4,478,597 - ECD_04207 0.42 +0.1 4,478,597 - ECD_04207 0.42 +1.2 4,478,597 - ECD_04207 0.42 +0.5 4,478,597 - ECD_04207 0.42 -0.3 4,478,641 + ECD_04207 0.47 +0.1 4,478,646 + ECD_04207 0.48 -1.4 4,478,660 + ECD_04207 0.50 -0.8 4,478,757 - ECD_04207 0.62 -0.8 4,478,826 - ECD_04207 0.71 +0.4 4,478,867 - ECD_04207 0.77 -1.2 4,478,870 - ECD_04207 0.77 -0.1 4,478,873 - ECD_04207 0.78 -0.3 4,478,930 - ECD_04207 0.85 +0.2 4,479,043 - -1.1 4,479,043 - -0.1 4,479,820 + +1.2 4,479,868 + -1.8 4,479,950 + +0.4
Or see this region's nucleotide sequence