Strain Fitness in Escherichia coli BL21 around ECD_04207

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04206 and ECD_04207 are separated by 478 nucleotidesECD_04207 and ECD_04208 are separated by 54 nucleotidesECD_04208 and ECD_04209 overlap by 82 nucleotides ECD_04206: ECD_04206 - multidrug efflux system protein, at 4,476,566 to 4,477,798 _04206 ECD_04207: ECD_04207 - putative transposase, at 4,478,277 to 4,479,044 _04207 ECD_04208: ECD_04208 - IS1 protein InsA, at 4,479,099 to 4,479,374 _04208 ECD_04209: ECD_04209 - IS1 protein InsB, at 4,479,293 to 4,479,796 _04209 Position (kb) 4478 4479 4480Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4477.431 kb on + strand, within ECD_04206at 4477.456 kb on + strand, within ECD_04206at 4477.456 kb on + strand, within ECD_04206at 4477.457 kb on - strand, within ECD_04206at 4477.498 kb on + strand, within ECD_04206at 4477.535 kb on - strand, within ECD_04206at 4477.607 kb on + strand, within ECD_04206at 4477.679 kb on + strandat 4477.680 kb on - strandat 4477.680 kb on - strandat 4477.687 kb on + strandat 4477.723 kb on - strandat 4477.916 kb on - strandat 4477.979 kb on + strandat 4477.980 kb on - strandat 4477.994 kb on + strandat 4478.010 kb on - strandat 4478.010 kb on - strandat 4478.051 kb on + strandat 4478.052 kb on - strandat 4478.052 kb on - strandat 4478.052 kb on - strandat 4478.061 kb on + strandat 4478.104 kb on - strandat 4478.371 kb on + strand, within ECD_04207at 4478.410 kb on + strand, within ECD_04207at 4478.410 kb on + strand, within ECD_04207at 4478.411 kb on - strand, within ECD_04207at 4478.411 kb on - strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.547 kb on - strand, within ECD_04207at 4478.594 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.641 kb on + strand, within ECD_04207at 4478.646 kb on + strand, within ECD_04207at 4478.660 kb on + strand, within ECD_04207at 4478.757 kb on - strand, within ECD_04207at 4478.826 kb on - strand, within ECD_04207at 4478.867 kb on - strand, within ECD_04207at 4478.870 kb on - strand, within ECD_04207at 4478.873 kb on - strand, within ECD_04207at 4478.930 kb on - strand, within ECD_04207at 4479.043 kb on - strandat 4479.043 kb on - strandat 4479.820 kb on + strandat 4479.868 kb on + strandat 4479.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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4,477,431 + ECD_04206 0.70 -0.2
4,477,456 + ECD_04206 0.72 +0.3
4,477,456 + ECD_04206 0.72 -1.0
4,477,457 - ECD_04206 0.72 -0.5
4,477,498 + ECD_04206 0.76 +0.5
4,477,535 - ECD_04206 0.79 -0.5
4,477,607 + ECD_04206 0.84 -1.7
4,477,679 + -0.0
4,477,680 - -2.5
4,477,680 - +0.2
4,477,687 + -1.3
4,477,723 - +1.4
4,477,916 - +0.1
4,477,979 + +1.5
4,477,980 - +2.9
4,477,994 + -0.2
4,478,010 - -0.7
4,478,010 - +0.3
4,478,051 + -0.5
4,478,052 - +0.3
4,478,052 - -0.7
4,478,052 - +0.0
4,478,061 + +0.2
4,478,104 - -0.2
4,478,371 + ECD_04207 0.12 -1.0
4,478,410 + ECD_04207 0.17 -0.8
4,478,410 + ECD_04207 0.17 +0.9
4,478,411 - ECD_04207 0.17 +0.4
4,478,411 - ECD_04207 0.17 +0.1
4,478,502 + ECD_04207 0.29 -0.3
4,478,502 + ECD_04207 0.29 -0.5
4,478,502 + ECD_04207 0.29 -0.8
4,478,502 + ECD_04207 0.29 +0.1
4,478,502 + ECD_04207 0.29 +0.3
4,478,503 - ECD_04207 0.29 +0.4
4,478,503 - ECD_04207 0.29 +0.5
4,478,503 - ECD_04207 0.29 +0.0
4,478,503 - ECD_04207 0.29 -0.5
4,478,503 - ECD_04207 0.29 +0.4
4,478,504 + ECD_04207 0.30 -1.0
4,478,504 + ECD_04207 0.30 -1.0
4,478,504 + ECD_04207 0.30 +0.1
4,478,504 + ECD_04207 0.30 +1.3
4,478,505 - ECD_04207 0.30 +0.2
4,478,505 - ECD_04207 0.30 +0.7
4,478,505 - ECD_04207 0.30 +0.2
4,478,505 - ECD_04207 0.30 +0.2
4,478,505 - ECD_04207 0.30 -0.8
4,478,505 - ECD_04207 0.30 -0.1
4,478,508 + ECD_04207 0.30 -0.8
4,478,508 + ECD_04207 0.30 +0.6
4,478,508 + ECD_04207 0.30 +0.2
4,478,508 + ECD_04207 0.30 +0.8
4,478,508 + ECD_04207 0.30 +0.4
4,478,508 + ECD_04207 0.30 +0.7
4,478,508 + ECD_04207 0.30 +0.4
4,478,508 + ECD_04207 0.30 +0.2
4,478,509 - ECD_04207 0.30 +0.2
4,478,509 - ECD_04207 0.30 -1.3
4,478,509 - ECD_04207 0.30 +0.2
4,478,509 - ECD_04207 0.30 +0.6
4,478,509 - ECD_04207 0.30 -1.9
4,478,547 - ECD_04207 0.35 +1.9
4,478,594 + ECD_04207 0.41 -0.3
4,478,596 + ECD_04207 0.42 -1.4
4,478,596 + ECD_04207 0.42 +1.4
4,478,596 + ECD_04207 0.42 -0.5
4,478,596 + ECD_04207 0.42 -0.3
4,478,596 + ECD_04207 0.42 +0.2
4,478,596 + ECD_04207 0.42 +0.0
4,478,597 - ECD_04207 0.42 +0.1
4,478,597 - ECD_04207 0.42 +1.2
4,478,597 - ECD_04207 0.42 +0.5
4,478,597 - ECD_04207 0.42 -0.3
4,478,641 + ECD_04207 0.47 +0.1
4,478,646 + ECD_04207 0.48 -1.4
4,478,660 + ECD_04207 0.50 -0.8
4,478,757 - ECD_04207 0.62 -0.8
4,478,826 - ECD_04207 0.71 +0.4
4,478,867 - ECD_04207 0.77 -1.2
4,478,870 - ECD_04207 0.77 -0.1
4,478,873 - ECD_04207 0.78 -0.3
4,478,930 - ECD_04207 0.85 +0.2
4,479,043 - -1.1
4,479,043 - -0.1
4,479,820 + +1.2
4,479,868 + -1.8
4,479,950 + +0.4

Or see this region's nucleotide sequence