Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04192 and ECD_04193 are separated by 214 nucleotides ECD_04193 and ECD_04194 are separated by 140 nucleotides
ECD_04192: ECD_04192 - D-mannonate oxidoreductase, NAD-dependent, at 4,462,180 to 4,463,640
_04192
ECD_04193: ECD_04193 - fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor, at 4,463,855 to 4,464,628
_04193
ECD_04194: ECD_04194 - uncharacterized protein, at 4,464,769 to 4,465,599
_04194
Position (kb)
4463
4464
4465 Strain fitness (log2 ratio)
-2
-1
0
1 at 4462.971 kb on + strand, within ECD_04192 at 4462.972 kb on - strand, within ECD_04192 at 4463.058 kb on + strand, within ECD_04192 at 4463.277 kb on + strand, within ECD_04192 at 4463.277 kb on + strand, within ECD_04192 at 4463.277 kb on + strand, within ECD_04192 at 4463.277 kb on + strand, within ECD_04192 at 4463.405 kb on - strand, within ECD_04192 at 4463.489 kb on - strand, within ECD_04192 at 4463.590 kb on + strand at 4463.590 kb on + strand at 4463.591 kb on - strand at 4463.638 kb on + strand at 4463.683 kb on - strand at 4463.719 kb on + strand at 4463.748 kb on - strand at 4463.748 kb on - strand at 4463.748 kb on - strand at 4464.068 kb on + strand, within ECD_04193 at 4464.068 kb on + strand, within ECD_04193 at 4464.069 kb on - strand, within ECD_04193 at 4464.882 kb on + strand, within ECD_04194 at 4464.974 kb on - strand, within ECD_04194 at 4465.108 kb on + strand, within ECD_04194
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 4,462,971 + ECD_04192 0.54 -0.3 4,462,972 - ECD_04192 0.54 +0.2 4,463,058 + ECD_04192 0.60 +0.4 4,463,277 + ECD_04192 0.75 -0.2 4,463,277 + ECD_04192 0.75 -0.8 4,463,277 + ECD_04192 0.75 +0.2 4,463,277 + ECD_04192 0.75 +0.9 4,463,405 - ECD_04192 0.84 -2.2 4,463,489 - ECD_04192 0.90 +0.3 4,463,590 + +0.2 4,463,590 + -0.5 4,463,591 - +0.4 4,463,638 + +0.0 4,463,683 - -1.5 4,463,719 + +0.1 4,463,748 - +0.9 4,463,748 - -0.5 4,463,748 - -1.2 4,464,068 + ECD_04193 0.28 -0.3 4,464,068 + ECD_04193 0.28 -0.8 4,464,069 - ECD_04193 0.28 -1.2 4,464,882 + ECD_04194 0.14 -1.1 4,464,974 - ECD_04194 0.25 +1.4 4,465,108 + ECD_04194 0.41 +1.1
Or see this region's nucleotide sequence