Strain Fitness in Escherichia coli BL21 around ECD_04130

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04129 and ECD_04130 are separated by 77 nucleotidesECD_04130 and ECD_04131 are separated by 66 nucleotides ECD_04129: ECD_04129 - DUF853 family protein with NTPase fold, at 4,400,153 to 4,401,655 _04129 ECD_04130: ECD_04130 - transcriptional repressor, 5-gluconate-binding, at 4,401,733 to 4,402,731 _04130 ECD_04131: ECD_04131 - L-idonate and D-gluconate transporter, at 4,402,798 to 4,404,117 _04131 Position (kb) 4401 4402 4403Strain fitness (log2 ratio) -2 -1 0 1 2at 4400.789 kb on - strand, within ECD_04129at 4400.822 kb on + strand, within ECD_04129at 4400.916 kb on + strand, within ECD_04129at 4400.917 kb on - strand, within ECD_04129at 4401.134 kb on - strand, within ECD_04129at 4401.136 kb on + strand, within ECD_04129at 4401.142 kb on - strand, within ECD_04129at 4401.250 kb on + strand, within ECD_04129at 4401.638 kb on + strandat 4401.639 kb on - strandat 4401.685 kb on - strandat 4401.686 kb on + strandat 4401.715 kb on + strandat 4401.716 kb on - strandat 4401.716 kb on - strandat 4401.734 kb on + strandat 4402.000 kb on + strand, within ECD_04130at 4402.010 kb on - strand, within ECD_04130at 4402.042 kb on + strand, within ECD_04130at 4402.090 kb on + strand, within ECD_04130at 4402.212 kb on + strand, within ECD_04130at 4402.213 kb on - strand, within ECD_04130at 4402.213 kb on - strand, within ECD_04130at 4402.280 kb on - strand, within ECD_04130at 4402.280 kb on - strand, within ECD_04130at 4402.361 kb on - strand, within ECD_04130at 4402.378 kb on - strand, within ECD_04130at 4402.379 kb on + strand, within ECD_04130at 4402.425 kb on - strand, within ECD_04130at 4402.455 kb on + strand, within ECD_04130at 4402.456 kb on - strand, within ECD_04130at 4402.539 kb on + strand, within ECD_04130at 4402.539 kb on + strand, within ECD_04130at 4402.657 kb on - strandat 4402.776 kb on + strandat 4402.787 kb on - strandat 4402.915 kb on - strandat 4402.940 kb on - strand, within ECD_04131at 4402.984 kb on + strand, within ECD_04131at 4402.985 kb on - strand, within ECD_04131at 4403.121 kb on + strand, within ECD_04131at 4403.122 kb on - strand, within ECD_04131at 4403.134 kb on + strand, within ECD_04131at 4403.135 kb on - strand, within ECD_04131at 4403.146 kb on - strand, within ECD_04131at 4403.146 kb on - strand, within ECD_04131at 4403.146 kb on - strand, within ECD_04131at 4403.147 kb on + strand, within ECD_04131at 4403.167 kb on + strand, within ECD_04131at 4403.167 kb on + strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.170 kb on + strand, within ECD_04131at 4403.171 kb on - strand, within ECD_04131at 4403.171 kb on - strand, within ECD_04131at 4403.173 kb on + strand, within ECD_04131at 4403.205 kb on + strand, within ECD_04131at 4403.206 kb on - strand, within ECD_04131at 4403.232 kb on + strand, within ECD_04131at 4403.233 kb on - strand, within ECD_04131at 4403.233 kb on - strand, within ECD_04131at 4403.247 kb on + strand, within ECD_04131at 4403.278 kb on - strand, within ECD_04131at 4403.305 kb on - strand, within ECD_04131at 4403.305 kb on - strand, within ECD_04131at 4403.316 kb on + strand, within ECD_04131at 4403.317 kb on - strand, within ECD_04131at 4403.370 kb on + strand, within ECD_04131at 4403.475 kb on + strand, within ECD_04131at 4403.483 kb on - strand, within ECD_04131at 4403.494 kb on + strand, within ECD_04131at 4403.494 kb on + strand, within ECD_04131at 4403.559 kb on + strand, within ECD_04131at 4403.560 kb on - strand, within ECD_04131at 4403.560 kb on - strand, within ECD_04131at 4403.581 kb on - strand, within ECD_04131at 4403.588 kb on + strand, within ECD_04131at 4403.705 kb on + strand, within ECD_04131at 4403.706 kb on - strand, within ECD_04131at 4403.706 kb on - strand, within ECD_04131at 4403.731 kb on + strand, within ECD_04131

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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4,400,789 - ECD_04129 0.42 +1.0
4,400,822 + ECD_04129 0.45 +0.5
4,400,916 + ECD_04129 0.51 +0.4
4,400,917 - ECD_04129 0.51 +0.4
4,401,134 - ECD_04129 0.65 +1.4
4,401,136 + ECD_04129 0.65 +0.6
4,401,142 - ECD_04129 0.66 +0.4
4,401,250 + ECD_04129 0.73 -0.5
4,401,638 + +0.5
4,401,639 - -0.3
4,401,685 - -0.3
4,401,686 + -0.4
4,401,715 + +0.6
4,401,716 - +1.5
4,401,716 - +1.2
4,401,734 + -1.2
4,402,000 + ECD_04130 0.27 -0.7
4,402,010 - ECD_04130 0.28 -0.0
4,402,042 + ECD_04130 0.31 +0.9
4,402,090 + ECD_04130 0.36 -0.5
4,402,212 + ECD_04130 0.48 -0.7
4,402,213 - ECD_04130 0.48 +1.1
4,402,213 - ECD_04130 0.48 +0.1
4,402,280 - ECD_04130 0.55 +0.8
4,402,280 - ECD_04130 0.55 +0.7
4,402,361 - ECD_04130 0.63 +0.6
4,402,378 - ECD_04130 0.65 +0.3
4,402,379 + ECD_04130 0.65 -0.2
4,402,425 - ECD_04130 0.69 +0.4
4,402,455 + ECD_04130 0.72 +1.1
4,402,456 - ECD_04130 0.72 -1.3
4,402,539 + ECD_04130 0.81 +0.3
4,402,539 + ECD_04130 0.81 +2.1
4,402,657 - +0.9
4,402,776 + +0.4
4,402,787 - +1.1
4,402,915 - +2.2
4,402,940 - ECD_04131 0.11 +0.4
4,402,984 + ECD_04131 0.14 +0.5
4,402,985 - ECD_04131 0.14 -1.4
4,403,121 + ECD_04131 0.24 +0.4
4,403,122 - ECD_04131 0.25 +0.3
4,403,134 + ECD_04131 0.25 -1.3
4,403,135 - ECD_04131 0.26 +0.9
4,403,146 - ECD_04131 0.26 +0.3
4,403,146 - ECD_04131 0.26 -2.3
4,403,146 - ECD_04131 0.26 +1.1
4,403,147 + ECD_04131 0.26 +0.4
4,403,167 + ECD_04131 0.28 -0.1
4,403,167 + ECD_04131 0.28 -0.9
4,403,168 - ECD_04131 0.28 +1.2
4,403,168 - ECD_04131 0.28 -2.2
4,403,168 - ECD_04131 0.28 +0.2
4,403,168 - ECD_04131 0.28 -0.3
4,403,170 + ECD_04131 0.28 -0.0
4,403,171 - ECD_04131 0.28 -0.4
4,403,171 - ECD_04131 0.28 +0.2
4,403,173 + ECD_04131 0.28 -0.3
4,403,205 + ECD_04131 0.31 -0.7
4,403,206 - ECD_04131 0.31 +0.2
4,403,232 + ECD_04131 0.33 +0.4
4,403,233 - ECD_04131 0.33 -0.2
4,403,233 - ECD_04131 0.33 +0.4
4,403,247 + ECD_04131 0.34 +0.2
4,403,278 - ECD_04131 0.36 +2.0
4,403,305 - ECD_04131 0.38 -0.0
4,403,305 - ECD_04131 0.38 +0.3
4,403,316 + ECD_04131 0.39 +1.8
4,403,317 - ECD_04131 0.39 +0.6
4,403,370 + ECD_04131 0.43 -0.8
4,403,475 + ECD_04131 0.51 +0.8
4,403,483 - ECD_04131 0.52 +1.3
4,403,494 + ECD_04131 0.53 -0.2
4,403,494 + ECD_04131 0.53 -0.8
4,403,559 + ECD_04131 0.58 -0.5
4,403,560 - ECD_04131 0.58 -0.5
4,403,560 - ECD_04131 0.58 +0.0
4,403,581 - ECD_04131 0.59 -1.8
4,403,588 + ECD_04131 0.60 +1.4
4,403,705 + ECD_04131 0.69 -0.1
4,403,706 - ECD_04131 0.69 -2.3
4,403,706 - ECD_04131 0.69 +0.9
4,403,731 + ECD_04131 0.71 -0.9

Or see this region's nucleotide sequence