Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04129 and ECD_04130 are separated by 77 nucleotides ECD_04130 and ECD_04131 are separated by 66 nucleotides
ECD_04129: ECD_04129 - DUF853 family protein with NTPase fold, at 4,400,153 to 4,401,655
_04129
ECD_04130: ECD_04130 - transcriptional repressor, 5-gluconate-binding, at 4,401,733 to 4,402,731
_04130
ECD_04131: ECD_04131 - L-idonate and D-gluconate transporter, at 4,402,798 to 4,404,117
_04131
Position (kb)
4401
4402
4403 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4400.789 kb on - strand, within ECD_04129 at 4400.822 kb on + strand, within ECD_04129 at 4400.916 kb on + strand, within ECD_04129 at 4400.917 kb on - strand, within ECD_04129 at 4401.134 kb on - strand, within ECD_04129 at 4401.136 kb on + strand, within ECD_04129 at 4401.142 kb on - strand, within ECD_04129 at 4401.250 kb on + strand, within ECD_04129 at 4401.638 kb on + strand at 4401.639 kb on - strand at 4401.685 kb on - strand at 4401.686 kb on + strand at 4401.715 kb on + strand at 4401.716 kb on - strand at 4401.716 kb on - strand at 4401.734 kb on + strand at 4402.000 kb on + strand, within ECD_04130 at 4402.010 kb on - strand, within ECD_04130 at 4402.042 kb on + strand, within ECD_04130 at 4402.090 kb on + strand, within ECD_04130 at 4402.212 kb on + strand, within ECD_04130 at 4402.213 kb on - strand, within ECD_04130 at 4402.213 kb on - strand, within ECD_04130 at 4402.280 kb on - strand, within ECD_04130 at 4402.280 kb on - strand, within ECD_04130 at 4402.361 kb on - strand, within ECD_04130 at 4402.378 kb on - strand, within ECD_04130 at 4402.379 kb on + strand, within ECD_04130 at 4402.425 kb on - strand, within ECD_04130 at 4402.455 kb on + strand, within ECD_04130 at 4402.456 kb on - strand, within ECD_04130 at 4402.539 kb on + strand, within ECD_04130 at 4402.539 kb on + strand, within ECD_04130 at 4402.657 kb on - strand at 4402.776 kb on + strand at 4402.787 kb on - strand at 4402.915 kb on - strand at 4402.940 kb on - strand, within ECD_04131 at 4402.984 kb on + strand, within ECD_04131 at 4402.985 kb on - strand, within ECD_04131 at 4403.121 kb on + strand, within ECD_04131 at 4403.122 kb on - strand, within ECD_04131 at 4403.134 kb on + strand, within ECD_04131 at 4403.135 kb on - strand, within ECD_04131 at 4403.146 kb on - strand, within ECD_04131 at 4403.146 kb on - strand, within ECD_04131 at 4403.146 kb on - strand, within ECD_04131 at 4403.147 kb on + strand, within ECD_04131 at 4403.167 kb on + strand, within ECD_04131 at 4403.167 kb on + strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.170 kb on + strand, within ECD_04131 at 4403.171 kb on - strand, within ECD_04131 at 4403.171 kb on - strand, within ECD_04131 at 4403.173 kb on + strand, within ECD_04131 at 4403.205 kb on + strand, within ECD_04131 at 4403.206 kb on - strand, within ECD_04131 at 4403.232 kb on + strand, within ECD_04131 at 4403.233 kb on - strand, within ECD_04131 at 4403.233 kb on - strand, within ECD_04131 at 4403.247 kb on + strand, within ECD_04131 at 4403.278 kb on - strand, within ECD_04131 at 4403.305 kb on - strand, within ECD_04131 at 4403.305 kb on - strand, within ECD_04131 at 4403.316 kb on + strand, within ECD_04131 at 4403.317 kb on - strand, within ECD_04131 at 4403.370 kb on + strand, within ECD_04131 at 4403.475 kb on + strand, within ECD_04131 at 4403.483 kb on - strand, within ECD_04131 at 4403.494 kb on + strand, within ECD_04131 at 4403.494 kb on + strand, within ECD_04131 at 4403.559 kb on + strand, within ECD_04131 at 4403.560 kb on - strand, within ECD_04131 at 4403.560 kb on - strand, within ECD_04131 at 4403.581 kb on - strand, within ECD_04131 at 4403.588 kb on + strand, within ECD_04131 at 4403.705 kb on + strand, within ECD_04131 at 4403.706 kb on - strand, within ECD_04131 at 4403.706 kb on - strand, within ECD_04131 at 4403.731 kb on + strand, within ECD_04131
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 4,400,789 - ECD_04129 0.42 +1.0 4,400,822 + ECD_04129 0.45 +0.5 4,400,916 + ECD_04129 0.51 +0.4 4,400,917 - ECD_04129 0.51 +0.4 4,401,134 - ECD_04129 0.65 +1.4 4,401,136 + ECD_04129 0.65 +0.6 4,401,142 - ECD_04129 0.66 +0.4 4,401,250 + ECD_04129 0.73 -0.5 4,401,638 + +0.5 4,401,639 - -0.3 4,401,685 - -0.3 4,401,686 + -0.4 4,401,715 + +0.6 4,401,716 - +1.5 4,401,716 - +1.2 4,401,734 + -1.2 4,402,000 + ECD_04130 0.27 -0.7 4,402,010 - ECD_04130 0.28 -0.0 4,402,042 + ECD_04130 0.31 +0.9 4,402,090 + ECD_04130 0.36 -0.5 4,402,212 + ECD_04130 0.48 -0.7 4,402,213 - ECD_04130 0.48 +1.1 4,402,213 - ECD_04130 0.48 +0.1 4,402,280 - ECD_04130 0.55 +0.8 4,402,280 - ECD_04130 0.55 +0.7 4,402,361 - ECD_04130 0.63 +0.6 4,402,378 - ECD_04130 0.65 +0.3 4,402,379 + ECD_04130 0.65 -0.2 4,402,425 - ECD_04130 0.69 +0.4 4,402,455 + ECD_04130 0.72 +1.1 4,402,456 - ECD_04130 0.72 -1.3 4,402,539 + ECD_04130 0.81 +0.3 4,402,539 + ECD_04130 0.81 +2.1 4,402,657 - +0.9 4,402,776 + +0.4 4,402,787 - +1.1 4,402,915 - +2.2 4,402,940 - ECD_04131 0.11 +0.4 4,402,984 + ECD_04131 0.14 +0.5 4,402,985 - ECD_04131 0.14 -1.4 4,403,121 + ECD_04131 0.24 +0.4 4,403,122 - ECD_04131 0.25 +0.3 4,403,134 + ECD_04131 0.25 -1.3 4,403,135 - ECD_04131 0.26 +0.9 4,403,146 - ECD_04131 0.26 +0.3 4,403,146 - ECD_04131 0.26 -2.3 4,403,146 - ECD_04131 0.26 +1.1 4,403,147 + ECD_04131 0.26 +0.4 4,403,167 + ECD_04131 0.28 -0.1 4,403,167 + ECD_04131 0.28 -0.9 4,403,168 - ECD_04131 0.28 +1.2 4,403,168 - ECD_04131 0.28 -2.2 4,403,168 - ECD_04131 0.28 +0.2 4,403,168 - ECD_04131 0.28 -0.3 4,403,170 + ECD_04131 0.28 -0.0 4,403,171 - ECD_04131 0.28 -0.4 4,403,171 - ECD_04131 0.28 +0.2 4,403,173 + ECD_04131 0.28 -0.3 4,403,205 + ECD_04131 0.31 -0.7 4,403,206 - ECD_04131 0.31 +0.2 4,403,232 + ECD_04131 0.33 +0.4 4,403,233 - ECD_04131 0.33 -0.2 4,403,233 - ECD_04131 0.33 +0.4 4,403,247 + ECD_04131 0.34 +0.2 4,403,278 - ECD_04131 0.36 +2.0 4,403,305 - ECD_04131 0.38 -0.0 4,403,305 - ECD_04131 0.38 +0.3 4,403,316 + ECD_04131 0.39 +1.8 4,403,317 - ECD_04131 0.39 +0.6 4,403,370 + ECD_04131 0.43 -0.8 4,403,475 + ECD_04131 0.51 +0.8 4,403,483 - ECD_04131 0.52 +1.3 4,403,494 + ECD_04131 0.53 -0.2 4,403,494 + ECD_04131 0.53 -0.8 4,403,559 + ECD_04131 0.58 -0.5 4,403,560 - ECD_04131 0.58 -0.5 4,403,560 - ECD_04131 0.58 +0.0 4,403,581 - ECD_04131 0.59 -1.8 4,403,588 + ECD_04131 0.60 +1.4 4,403,705 + ECD_04131 0.69 -0.1 4,403,706 - ECD_04131 0.69 -2.3 4,403,706 - ECD_04131 0.69 +0.9 4,403,731 + ECD_04131 0.71 -0.9
Or see this region's nucleotide sequence