Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04046 and ECD_04047 are separated by 179 nucleotides ECD_04047 and ECD_04048 are separated by 126 nucleotides ECD_04048 and ECD_04049 are separated by 18 nucleotides
ECD_04046: ECD_04046 - exoribonuclease R, RNase R, at 4,313,174 to 4,315,615
_04046
ECD_04047: ECD_04047 - 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent, at 4,315,795 to 4,316,526
_04047
ECD_04048: ECD_04048 - DUF2170 family protein, at 4,316,653 to 4,317,054
_04048
ECD_04049: ECD_04049 - PspA/IM30 family protein, at 4,317,073 to 4,317,771
_04049
Position (kb) 4315
4316
4317 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4314.860 kb on + strand, within ECD_04046 at 4314.871 kb on + strand, within ECD_04046 at 4314.871 kb on + strand, within ECD_04046 at 4314.871 kb on + strand, within ECD_04046 at 4314.872 kb on - strand, within ECD_04046 at 4314.920 kb on - strand, within ECD_04046 at 4314.923 kb on + strand, within ECD_04046 at 4314.923 kb on + strand, within ECD_04046 at 4314.924 kb on - strand, within ECD_04046 at 4315.105 kb on + strand, within ECD_04046 at 4315.214 kb on + strand, within ECD_04046 at 4315.214 kb on + strand, within ECD_04046 at 4315.214 kb on + strand, within ECD_04046 at 4315.214 kb on + strand, within ECD_04046 at 4315.217 kb on + strand, within ECD_04046 at 4315.315 kb on + strand, within ECD_04046 at 4315.316 kb on - strand, within ECD_04046 at 4315.620 kb on + strand at 4315.704 kb on + strand at 4315.708 kb on + strand at 4315.708 kb on + strand at 4315.725 kb on + strand at 4315.743 kb on + strand at 4315.743 kb on + strand at 4315.758 kb on + strand at 4315.758 kb on + strand at 4315.759 kb on - strand at 4315.788 kb on + strand at 4315.789 kb on - strand at 4315.811 kb on - strand at 4315.873 kb on - strand, within ECD_04047 at 4315.894 kb on - strand, within ECD_04047 at 4316.137 kb on - strand, within ECD_04047 at 4316.280 kb on + strand, within ECD_04047 at 4316.280 kb on + strand, within ECD_04047 at 4316.280 kb on + strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.334 kb on + strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.341 kb on + strand, within ECD_04047 at 4316.342 kb on - strand, within ECD_04047 at 4316.398 kb on - strand, within ECD_04047 at 4316.832 kb on + strand, within ECD_04048 at 4316.935 kb on + strand, within ECD_04048 at 4317.328 kb on - strand, within ECD_04049
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 4,314,860 + ECD_04046 0.69 +1.5 4,314,871 + ECD_04046 0.69 -0.1 4,314,871 + ECD_04046 0.69 -0.2 4,314,871 + ECD_04046 0.69 +1.1 4,314,872 - ECD_04046 0.70 +0.6 4,314,920 - ECD_04046 0.71 +0.8 4,314,923 + ECD_04046 0.72 +1.4 4,314,923 + ECD_04046 0.72 +1.2 4,314,924 - ECD_04046 0.72 -2.2 4,315,105 + ECD_04046 0.79 +0.3 4,315,214 + ECD_04046 0.84 -1.3 4,315,214 + ECD_04046 0.84 +1.0 4,315,214 + ECD_04046 0.84 +0.8 4,315,214 + ECD_04046 0.84 +0.9 4,315,217 + ECD_04046 0.84 -0.5 4,315,315 + ECD_04046 0.88 +0.2 4,315,316 - ECD_04046 0.88 -1.2 4,315,620 + +1.0 4,315,704 + -0.2 4,315,708 + -1.8 4,315,708 + +0.7 4,315,725 + -0.2 4,315,743 + -1.7 4,315,743 + -1.3 4,315,758 + -1.8 4,315,758 + -0.3 4,315,759 - -1.4 4,315,788 + -0.6 4,315,789 - -3.0 4,315,811 - -0.6 4,315,873 - ECD_04047 0.11 -1.8 4,315,894 - ECD_04047 0.14 +0.3 4,316,137 - ECD_04047 0.47 -1.5 4,316,280 + ECD_04047 0.66 -0.3 4,316,280 + ECD_04047 0.66 -1.5 4,316,280 + ECD_04047 0.66 -1.8 4,316,281 - ECD_04047 0.66 +0.1 4,316,281 - ECD_04047 0.66 -1.4 4,316,281 - ECD_04047 0.66 -1.8 4,316,281 - ECD_04047 0.66 -0.3 4,316,334 + ECD_04047 0.74 -2.4 4,316,335 - ECD_04047 0.74 -0.7 4,316,335 - ECD_04047 0.74 +0.1 4,316,335 - ECD_04047 0.74 -0.8 4,316,335 - ECD_04047 0.74 -0.3 4,316,341 + ECD_04047 0.75 -1.3 4,316,342 - ECD_04047 0.75 -2.4 4,316,398 - ECD_04047 0.82 -0.3 4,316,832 + ECD_04048 0.45 +0.7 4,316,935 + ECD_04048 0.70 +0.5 4,317,328 - ECD_04049 0.36 -1.2
Or see this region's nucleotide sequence