Strain Fitness in Escherichia coli BL21 around ECD_03731

Experiment: EV116

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03728 and ECD_03729 are separated by 78 nucleotidesECD_03729 and ECD_03730 are separated by 3 nucleotidesECD_03730 and ECD_03731 are separated by 2 nucleotidesECD_03731 and ECD_03732 are separated by 41 nucleotidesECD_03732 and ECD_03733 overlap by 4 nucleotides ECD_03728: ECD_03728 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransferase; putative ABC1 family protein kinase, at 3,927,137 to 3,928,777 _03728 ECD_03729: ECD_03729 - TatABCE protein translocation system subunit, at 3,928,856 to 3,929,125 _03729 ECD_03730: ECD_03730 - TatABCE protein translocation system subunit, at 3,929,129 to 3,929,644 _03730 ECD_03731: ECD_03731 - TatABCE protein translocation system subunit, at 3,929,647 to 3,930,423 _03731 ECD_03732: ECD_03732 - quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase, at 3,930,465 to 3,931,247 _03732 ECD_03733: ECD_03733 - transcription antitermination protein, at 3,931,244 to 3,931,732 _03733 Position (kb) 3929 3930 3931Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 3928.805 kb on + strandat 3928.810 kb on + strandat 3928.810 kb on + strandat 3928.811 kb on - strandat 3928.811 kb on - strandat 3928.811 kb on - strandat 3928.812 kb on + strandat 3928.812 kb on + strandat 3928.813 kb on - strandat 3928.813 kb on - strandat 3928.838 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.856 kb on - strandat 3928.856 kb on - strandat 3928.870 kb on + strandat 3928.870 kb on + strandat 3928.870 kb on + strandat 3928.881 kb on + strandat 3928.905 kb on + strand, within ECD_03729at 3929.110 kb on + strandat 3929.123 kb on + strandat 3929.124 kb on - strandat 3929.289 kb on + strand, within ECD_03730at 3929.382 kb on + strand, within ECD_03730at 3929.382 kb on + strand, within ECD_03730at 3929.383 kb on - strand, within ECD_03730at 3929.414 kb on + strand, within ECD_03730at 3929.414 kb on + strand, within ECD_03730at 3929.415 kb on - strand, within ECD_03730at 3929.577 kb on + strand, within ECD_03730at 3929.654 kb on + strandat 3929.752 kb on + strand, within ECD_03731at 3929.945 kb on - strand, within ECD_03731at 3929.945 kb on - strand, within ECD_03731at 3929.946 kb on + strand, within ECD_03731at 3929.947 kb on - strand, within ECD_03731at 3930.086 kb on + strand, within ECD_03731at 3930.195 kb on + strand, within ECD_03731at 3930.229 kb on + strand, within ECD_03731at 3930.313 kb on + strand, within ECD_03731at 3930.352 kb on + strandat 3930.352 kb on + strandat 3930.352 kb on + strandat 3930.452 kb on + strandat 3930.452 kb on + strandat 3930.459 kb on + strandat 3930.473 kb on + strandat 3930.551 kb on + strand, within ECD_03732at 3930.560 kb on - strand, within ECD_03732at 3930.575 kb on + strand, within ECD_03732at 3930.618 kb on + strand, within ECD_03732at 3930.646 kb on + strand, within ECD_03732at 3930.647 kb on - strand, within ECD_03732at 3930.647 kb on - strand, within ECD_03732at 3930.805 kb on + strand, within ECD_03732at 3930.806 kb on - strand, within ECD_03732at 3930.806 kb on - strand, within ECD_03732at 3930.806 kb on - strand, within ECD_03732at 3930.823 kb on + strand, within ECD_03732at 3930.824 kb on - strand, within ECD_03732at 3930.824 kb on - strand, within ECD_03732at 3930.836 kb on - strand, within ECD_03732at 3930.839 kb on + strand, within ECD_03732at 3930.839 kb on + strand, within ECD_03732at 3930.839 kb on + strand, within ECD_03732at 3930.839 kb on + strand, within ECD_03732at 3930.839 kb on + strand, within ECD_03732at 3930.839 kb on + strand, within ECD_03732at 3930.840 kb on - strand, within ECD_03732at 3930.840 kb on - strand, within ECD_03732at 3930.869 kb on + strand, within ECD_03732at 3930.870 kb on - strand, within ECD_03732at 3930.972 kb on + strand, within ECD_03732at 3930.972 kb on + strand, within ECD_03732at 3930.973 kb on - strand, within ECD_03732at 3930.973 kb on - strand, within ECD_03732at 3931.057 kb on + strand, within ECD_03732at 3931.148 kb on + strand, within ECD_03732at 3931.160 kb on + strand, within ECD_03732at 3931.161 kb on - strand, within ECD_03732at 3931.161 kb on - strand, within ECD_03732at 3931.161 kb on - strand, within ECD_03732at 3931.161 kb on - strand, within ECD_03732at 3931.161 kb on - strand, within ECD_03732at 3931.214 kb on + strandat 3931.214 kb on + strandat 3931.215 kb on - strandat 3931.215 kb on - strandat 3931.246 kb on - strandat 3931.283 kb on - strandat 3931.283 kb on - strandat 3931.292 kb on - strandat 3931.295 kb on - strand, within ECD_03733at 3931.295 kb on - strand, within ECD_03733at 3931.297 kb on + strand, within ECD_03733at 3931.297 kb on + strand, within ECD_03733at 3931.298 kb on - strand, within ECD_03733at 3931.298 kb on - strand, within ECD_03733at 3931.298 kb on - strand, within ECD_03733at 3931.303 kb on + strand, within ECD_03733at 3931.310 kb on + strand, within ECD_03733at 3931.310 kb on + strand, within ECD_03733at 3931.390 kb on + strand, within ECD_03733at 3931.390 kb on + strand, within ECD_03733at 3931.391 kb on - strand, within ECD_03733

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV116
remove
3,928,805 + +0.4
3,928,810 + -0.7
3,928,810 + +0.5
3,928,811 - +0.9
3,928,811 - -0.5
3,928,811 - -0.5
3,928,812 + -0.3
3,928,812 + -0.7
3,928,813 - -1.0
3,928,813 - -0.2
3,928,838 + -0.9
3,928,855 + -2.6
3,928,855 + +0.9
3,928,855 + -0.6
3,928,855 + -0.8
3,928,855 + -3.1
3,928,855 + -0.2
3,928,855 + -3.5
3,928,856 - +0.5
3,928,856 - +0.9
3,928,870 + -2.2
3,928,870 + -0.4
3,928,870 + -1.5
3,928,881 + -1.2
3,928,905 + ECD_03729 0.18 -0.9
3,929,110 + +0.0
3,929,123 + -2.9
3,929,124 - -0.5
3,929,289 + ECD_03730 0.31 -1.0
3,929,382 + ECD_03730 0.49 +0.7
3,929,382 + ECD_03730 0.49 -0.3
3,929,383 - ECD_03730 0.49 -1.1
3,929,414 + ECD_03730 0.55 +0.1
3,929,414 + ECD_03730 0.55 +0.4
3,929,415 - ECD_03730 0.55 +0.3
3,929,577 + ECD_03730 0.87 -0.0
3,929,654 + -0.9
3,929,752 + ECD_03731 0.14 -1.1
3,929,945 - ECD_03731 0.38 -0.3
3,929,945 - ECD_03731 0.38 +0.9
3,929,946 + ECD_03731 0.38 -2.1
3,929,947 - ECD_03731 0.39 -1.1
3,930,086 + ECD_03731 0.56 -0.6
3,930,195 + ECD_03731 0.71 -2.1
3,930,229 + ECD_03731 0.75 -1.2
3,930,313 + ECD_03731 0.86 -1.4
3,930,352 + +0.1
3,930,352 + -0.4
3,930,352 + -0.1
3,930,452 + -0.6
3,930,452 + +0.3
3,930,459 + +0.4
3,930,473 + +0.1
3,930,551 + ECD_03732 0.11 +2.1
3,930,560 - ECD_03732 0.12 -1.1
3,930,575 + ECD_03732 0.14 -1.2
3,930,618 + ECD_03732 0.20 -0.8
3,930,646 + ECD_03732 0.23 -0.5
3,930,647 - ECD_03732 0.23 -0.7
3,930,647 - ECD_03732 0.23 -2.1
3,930,805 + ECD_03732 0.43 -0.6
3,930,806 - ECD_03732 0.44 +0.1
3,930,806 - ECD_03732 0.44 -0.9
3,930,806 - ECD_03732 0.44 -1.3
3,930,823 + ECD_03732 0.46 -1.6
3,930,824 - ECD_03732 0.46 -1.2
3,930,824 - ECD_03732 0.46 +0.4
3,930,836 - ECD_03732 0.47 -0.1
3,930,839 + ECD_03732 0.48 -0.1
3,930,839 + ECD_03732 0.48 +1.5
3,930,839 + ECD_03732 0.48 +1.5
3,930,839 + ECD_03732 0.48 +0.2
3,930,839 + ECD_03732 0.48 -0.6
3,930,839 + ECD_03732 0.48 +0.4
3,930,840 - ECD_03732 0.48 +0.5
3,930,840 - ECD_03732 0.48 +1.5
3,930,869 + ECD_03732 0.52 -0.1
3,930,870 - ECD_03732 0.52 -1.1
3,930,972 + ECD_03732 0.65 -0.1
3,930,972 + ECD_03732 0.65 +0.1
3,930,973 - ECD_03732 0.65 -0.3
3,930,973 - ECD_03732 0.65 -0.4
3,931,057 + ECD_03732 0.76 +2.0
3,931,148 + ECD_03732 0.87 -0.7
3,931,160 + ECD_03732 0.89 +0.3
3,931,161 - ECD_03732 0.89 +0.1
3,931,161 - ECD_03732 0.89 -2.4
3,931,161 - ECD_03732 0.89 +0.1
3,931,161 - ECD_03732 0.89 +0.7
3,931,161 - ECD_03732 0.89 -0.2
3,931,214 + -0.3
3,931,214 + +0.4
3,931,215 - +0.3
3,931,215 - +0.6
3,931,246 - +0.6
3,931,283 - +4.9
3,931,283 - +2.1
3,931,292 - +3.0
3,931,295 - ECD_03733 0.10 +5.2
3,931,295 - ECD_03733 0.10 +4.1
3,931,297 + ECD_03733 0.11 +5.2
3,931,297 + ECD_03733 0.11 +6.5
3,931,298 - ECD_03733 0.11 +3.3
3,931,298 - ECD_03733 0.11 +2.3
3,931,298 - ECD_03733 0.11 +2.4
3,931,303 + ECD_03733 0.12 +3.1
3,931,310 + ECD_03733 0.13 +10.0
3,931,310 + ECD_03733 0.13 +8.4
3,931,390 + ECD_03733 0.30 +8.4
3,931,390 + ECD_03733 0.30 +8.5
3,931,391 - ECD_03733 0.30 +8.4

Or see this region's nucleotide sequence