Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03728 and ECD_03729 are separated by 78 nucleotides ECD_03729 and ECD_03730 are separated by 3 nucleotides ECD_03730 and ECD_03731 are separated by 2 nucleotides ECD_03731 and ECD_03732 are separated by 41 nucleotides ECD_03732 and ECD_03733 overlap by 4 nucleotides
ECD_03728: ECD_03728 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransferase; putative ABC1 family protein kinase, at 3,927,137 to 3,928,777
_03728
ECD_03729: ECD_03729 - TatABCE protein translocation system subunit, at 3,928,856 to 3,929,125
_03729
ECD_03730: ECD_03730 - TatABCE protein translocation system subunit, at 3,929,129 to 3,929,644
_03730
ECD_03731: ECD_03731 - TatABCE protein translocation system subunit, at 3,929,647 to 3,930,423
_03731
ECD_03732: ECD_03732 - quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase, at 3,930,465 to 3,931,247
_03732
ECD_03733: ECD_03733 - transcription antitermination protein, at 3,931,244 to 3,931,732
_03733
Position (kb)
3929
3930
3931 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 3928.805 kb on + strand at 3928.810 kb on + strand at 3928.810 kb on + strand at 3928.811 kb on - strand at 3928.811 kb on - strand at 3928.811 kb on - strand at 3928.812 kb on + strand at 3928.812 kb on + strand at 3928.813 kb on - strand at 3928.813 kb on - strand at 3928.838 kb on + strand at 3928.855 kb on + strand at 3928.855 kb on + strand at 3928.855 kb on + strand at 3928.855 kb on + strand at 3928.855 kb on + strand at 3928.855 kb on + strand at 3928.855 kb on + strand at 3928.856 kb on - strand at 3928.856 kb on - strand at 3928.870 kb on + strand at 3928.870 kb on + strand at 3928.870 kb on + strand at 3928.881 kb on + strand at 3928.905 kb on + strand, within ECD_03729 at 3929.110 kb on + strand at 3929.123 kb on + strand at 3929.124 kb on - strand at 3929.289 kb on + strand, within ECD_03730 at 3929.382 kb on + strand, within ECD_03730 at 3929.382 kb on + strand, within ECD_03730 at 3929.383 kb on - strand, within ECD_03730 at 3929.414 kb on + strand, within ECD_03730 at 3929.414 kb on + strand, within ECD_03730 at 3929.415 kb on - strand, within ECD_03730 at 3929.577 kb on + strand, within ECD_03730 at 3929.654 kb on + strand at 3929.752 kb on + strand, within ECD_03731 at 3929.945 kb on - strand, within ECD_03731 at 3929.945 kb on - strand, within ECD_03731 at 3929.946 kb on + strand, within ECD_03731 at 3929.947 kb on - strand, within ECD_03731 at 3930.086 kb on + strand, within ECD_03731 at 3930.195 kb on + strand, within ECD_03731 at 3930.229 kb on + strand, within ECD_03731 at 3930.313 kb on + strand, within ECD_03731 at 3930.352 kb on + strand at 3930.352 kb on + strand at 3930.352 kb on + strand at 3930.452 kb on + strand at 3930.452 kb on + strand at 3930.459 kb on + strand at 3930.473 kb on + strand at 3930.551 kb on + strand, within ECD_03732 at 3930.560 kb on - strand, within ECD_03732 at 3930.575 kb on + strand, within ECD_03732 at 3930.618 kb on + strand, within ECD_03732 at 3930.646 kb on + strand, within ECD_03732 at 3930.647 kb on - strand, within ECD_03732 at 3930.647 kb on - strand, within ECD_03732 at 3930.805 kb on + strand, within ECD_03732 at 3930.806 kb on - strand, within ECD_03732 at 3930.806 kb on - strand, within ECD_03732 at 3930.806 kb on - strand, within ECD_03732 at 3930.823 kb on + strand, within ECD_03732 at 3930.824 kb on - strand, within ECD_03732 at 3930.824 kb on - strand, within ECD_03732 at 3930.836 kb on - strand, within ECD_03732 at 3930.839 kb on + strand, within ECD_03732 at 3930.839 kb on + strand, within ECD_03732 at 3930.839 kb on + strand, within ECD_03732 at 3930.839 kb on + strand, within ECD_03732 at 3930.839 kb on + strand, within ECD_03732 at 3930.839 kb on + strand, within ECD_03732 at 3930.840 kb on - strand, within ECD_03732 at 3930.840 kb on - strand, within ECD_03732 at 3930.869 kb on + strand, within ECD_03732 at 3930.870 kb on - strand, within ECD_03732 at 3930.972 kb on + strand, within ECD_03732 at 3930.972 kb on + strand, within ECD_03732 at 3930.973 kb on - strand, within ECD_03732 at 3930.973 kb on - strand, within ECD_03732 at 3931.057 kb on + strand, within ECD_03732 at 3931.148 kb on + strand, within ECD_03732 at 3931.160 kb on + strand, within ECD_03732 at 3931.161 kb on - strand, within ECD_03732 at 3931.161 kb on - strand, within ECD_03732 at 3931.161 kb on - strand, within ECD_03732 at 3931.161 kb on - strand, within ECD_03732 at 3931.161 kb on - strand, within ECD_03732 at 3931.214 kb on + strand at 3931.214 kb on + strand at 3931.215 kb on - strand at 3931.215 kb on - strand at 3931.246 kb on - strand at 3931.283 kb on - strand at 3931.283 kb on - strand at 3931.292 kb on - strand at 3931.295 kb on - strand, within ECD_03733 at 3931.295 kb on - strand, within ECD_03733 at 3931.297 kb on + strand, within ECD_03733 at 3931.297 kb on + strand, within ECD_03733 at 3931.298 kb on - strand, within ECD_03733 at 3931.298 kb on - strand, within ECD_03733 at 3931.298 kb on - strand, within ECD_03733 at 3931.303 kb on + strand, within ECD_03733 at 3931.310 kb on + strand, within ECD_03733 at 3931.310 kb on + strand, within ECD_03733 at 3931.390 kb on + strand, within ECD_03733 at 3931.390 kb on + strand, within ECD_03733 at 3931.391 kb on - strand, within ECD_03733
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,928,805 + +0.4 3,928,810 + -0.7 3,928,810 + +0.5 3,928,811 - +0.9 3,928,811 - -0.5 3,928,811 - -0.5 3,928,812 + -0.3 3,928,812 + -0.7 3,928,813 - -1.0 3,928,813 - -0.2 3,928,838 + -0.9 3,928,855 + -2.6 3,928,855 + +0.9 3,928,855 + -0.6 3,928,855 + -0.8 3,928,855 + -3.1 3,928,855 + -0.2 3,928,855 + -3.5 3,928,856 - +0.5 3,928,856 - +0.9 3,928,870 + -2.2 3,928,870 + -0.4 3,928,870 + -1.5 3,928,881 + -1.2 3,928,905 + ECD_03729 0.18 -0.9 3,929,110 + +0.0 3,929,123 + -2.9 3,929,124 - -0.5 3,929,289 + ECD_03730 0.31 -1.0 3,929,382 + ECD_03730 0.49 +0.7 3,929,382 + ECD_03730 0.49 -0.3 3,929,383 - ECD_03730 0.49 -1.1 3,929,414 + ECD_03730 0.55 +0.1 3,929,414 + ECD_03730 0.55 +0.4 3,929,415 - ECD_03730 0.55 +0.3 3,929,577 + ECD_03730 0.87 -0.0 3,929,654 + -0.9 3,929,752 + ECD_03731 0.14 -1.1 3,929,945 - ECD_03731 0.38 -0.3 3,929,945 - ECD_03731 0.38 +0.9 3,929,946 + ECD_03731 0.38 -2.1 3,929,947 - ECD_03731 0.39 -1.1 3,930,086 + ECD_03731 0.56 -0.6 3,930,195 + ECD_03731 0.71 -2.1 3,930,229 + ECD_03731 0.75 -1.2 3,930,313 + ECD_03731 0.86 -1.4 3,930,352 + +0.1 3,930,352 + -0.4 3,930,352 + -0.1 3,930,452 + -0.6 3,930,452 + +0.3 3,930,459 + +0.4 3,930,473 + +0.1 3,930,551 + ECD_03732 0.11 +2.1 3,930,560 - ECD_03732 0.12 -1.1 3,930,575 + ECD_03732 0.14 -1.2 3,930,618 + ECD_03732 0.20 -0.8 3,930,646 + ECD_03732 0.23 -0.5 3,930,647 - ECD_03732 0.23 -0.7 3,930,647 - ECD_03732 0.23 -2.1 3,930,805 + ECD_03732 0.43 -0.6 3,930,806 - ECD_03732 0.44 +0.1 3,930,806 - ECD_03732 0.44 -0.9 3,930,806 - ECD_03732 0.44 -1.3 3,930,823 + ECD_03732 0.46 -1.6 3,930,824 - ECD_03732 0.46 -1.2 3,930,824 - ECD_03732 0.46 +0.4 3,930,836 - ECD_03732 0.47 -0.1 3,930,839 + ECD_03732 0.48 -0.1 3,930,839 + ECD_03732 0.48 +1.5 3,930,839 + ECD_03732 0.48 +1.5 3,930,839 + ECD_03732 0.48 +0.2 3,930,839 + ECD_03732 0.48 -0.6 3,930,839 + ECD_03732 0.48 +0.4 3,930,840 - ECD_03732 0.48 +0.5 3,930,840 - ECD_03732 0.48 +1.5 3,930,869 + ECD_03732 0.52 -0.1 3,930,870 - ECD_03732 0.52 -1.1 3,930,972 + ECD_03732 0.65 -0.1 3,930,972 + ECD_03732 0.65 +0.1 3,930,973 - ECD_03732 0.65 -0.3 3,930,973 - ECD_03732 0.65 -0.4 3,931,057 + ECD_03732 0.76 +2.0 3,931,148 + ECD_03732 0.87 -0.7 3,931,160 + ECD_03732 0.89 +0.3 3,931,161 - ECD_03732 0.89 +0.1 3,931,161 - ECD_03732 0.89 -2.4 3,931,161 - ECD_03732 0.89 +0.1 3,931,161 - ECD_03732 0.89 +0.7 3,931,161 - ECD_03732 0.89 -0.2 3,931,214 + -0.3 3,931,214 + +0.4 3,931,215 - +0.3 3,931,215 - +0.6 3,931,246 - +0.6 3,931,283 - +4.9 3,931,283 - +2.1 3,931,292 - +3.0 3,931,295 - ECD_03733 0.10 +5.2 3,931,295 - ECD_03733 0.10 +4.1 3,931,297 + ECD_03733 0.11 +5.2 3,931,297 + ECD_03733 0.11 +6.5 3,931,298 - ECD_03733 0.11 +3.3 3,931,298 - ECD_03733 0.11 +2.3 3,931,298 - ECD_03733 0.11 +2.4 3,931,303 + ECD_03733 0.12 +3.1 3,931,310 + ECD_03733 0.13 +10.0 3,931,310 + ECD_03733 0.13 +8.4 3,931,390 + ECD_03733 0.30 +8.4 3,931,390 + ECD_03733 0.30 +8.5 3,931,391 - ECD_03733 0.30 +8.4
Or see this region's nucleotide sequence