Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03713 and ECD_03714 overlap by 55 nucleotides ECD_03714 and ECD_03715 are separated by 94 nucleotides ECD_03715 and ECD_03716 are separated by 5 nucleotides
ECD_03713: ECD_03713 - hypothetical protein, at 3,911,853 to 3,913,328
_03713
ECD_03714: ECD_03714 - hypothetical protein, at 3,913,274 to 3,914,833
_03714
ECD_03715: ECD_03715 - hypothetical protein, at 3,914,928 to 3,915,788
_03715
ECD_03716: ECD_03716 - hypothetical protein, at 3,915,794 to 3,916,462
_03716
Position (kb)
3913
3914
3915 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3912.411 kb on - strand, within ECD_03713 at 3912.579 kb on - strand, within ECD_03713 at 3912.746 kb on + strand, within ECD_03713 at 3912.752 kb on + strand, within ECD_03713 at 3912.752 kb on + strand, within ECD_03713 at 3912.835 kb on + strand, within ECD_03713 at 3912.836 kb on - strand, within ECD_03713 at 3912.933 kb on - strand, within ECD_03713 at 3912.995 kb on + strand, within ECD_03713 at 3912.995 kb on + strand, within ECD_03713 at 3912.996 kb on - strand, within ECD_03713 at 3913.031 kb on + strand, within ECD_03713 at 3913.032 kb on - strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.212 kb on - strand at 3913.230 kb on + strand at 3913.263 kb on - strand at 3913.267 kb on - strand at 3913.271 kb on + strand at 3913.271 kb on + strand at 3913.271 kb on + strand at 3913.272 kb on - strand at 3913.272 kb on - strand at 3913.377 kb on - strand at 3913.385 kb on + strand at 3913.400 kb on + strand at 3913.401 kb on - strand at 3913.401 kb on - strand at 3913.453 kb on + strand, within ECD_03714 at 3913.502 kb on - strand, within ECD_03714 at 3913.502 kb on - strand, within ECD_03714 at 3913.523 kb on + strand, within ECD_03714 at 3913.523 kb on + strand, within ECD_03714 at 3913.535 kb on + strand, within ECD_03714 at 3913.679 kb on - strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.948 kb on + strand, within ECD_03714 at 3914.079 kb on - strand, within ECD_03714 at 3914.111 kb on + strand, within ECD_03714 at 3914.111 kb on + strand, within ECD_03714 at 3914.112 kb on - strand, within ECD_03714 at 3914.186 kb on - strand, within ECD_03714 at 3914.303 kb on - strand, within ECD_03714 at 3914.387 kb on - strand, within ECD_03714 at 3914.437 kb on + strand, within ECD_03714 at 3914.542 kb on + strand, within ECD_03714 at 3914.597 kb on + strand, within ECD_03714 at 3914.618 kb on - strand, within ECD_03714 at 3914.618 kb on - strand, within ECD_03714 at 3914.618 kb on - strand, within ECD_03714 at 3914.839 kb on + strand at 3914.891 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.983 kb on - strand at 3914.983 kb on - strand at 3915.070 kb on - strand, within ECD_03715 at 3915.118 kb on + strand, within ECD_03715 at 3915.118 kb on + strand, within ECD_03715 at 3915.233 kb on - strand, within ECD_03715 at 3915.244 kb on + strand, within ECD_03715 at 3915.244 kb on + strand, within ECD_03715 at 3915.245 kb on - strand, within ECD_03715 at 3915.245 kb on - strand, within ECD_03715 at 3915.273 kb on - strand, within ECD_03715 at 3915.333 kb on + strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.550 kb on - strand, within ECD_03715 at 3915.637 kb on + strand, within ECD_03715 at 3915.638 kb on - strand, within ECD_03715 at 3915.638 kb on - strand, within ECD_03715 at 3915.690 kb on + strand, within ECD_03715 at 3915.691 kb on - strand, within ECD_03715 at 3915.702 kb on - strand, within ECD_03715 at 3915.710 kb on + strand at 3915.711 kb on - strand at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.783 kb on + strand at 3915.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,912,411 - ECD_03713 0.38 -1.0 3,912,579 - ECD_03713 0.49 +0.5 3,912,746 + ECD_03713 0.61 +0.5 3,912,752 + ECD_03713 0.61 -0.8 3,912,752 + ECD_03713 0.61 -0.6 3,912,835 + ECD_03713 0.67 +0.3 3,912,836 - ECD_03713 0.67 -1.0 3,912,933 - ECD_03713 0.73 +1.0 3,912,995 + ECD_03713 0.77 -0.5 3,912,995 + ECD_03713 0.77 -1.2 3,912,996 - ECD_03713 0.77 -2.0 3,913,031 + ECD_03713 0.80 +1.9 3,913,032 - ECD_03713 0.80 +0.2 3,913,119 + ECD_03713 0.86 -0.3 3,913,119 + ECD_03713 0.86 +1.0 3,913,119 + ECD_03713 0.86 +0.4 3,913,119 + ECD_03713 0.86 +0.6 3,913,119 + ECD_03713 0.86 +0.3 3,913,120 - ECD_03713 0.86 +0.2 3,913,120 - ECD_03713 0.86 -0.1 3,913,120 - ECD_03713 0.86 -1.0 3,913,120 - ECD_03713 0.86 +0.4 3,913,120 - ECD_03713 0.86 -1.3 3,913,212 - -0.5 3,913,230 + -0.7 3,913,263 - -0.4 3,913,267 - -0.9 3,913,271 + +1.6 3,913,271 + +2.1 3,913,271 + +0.7 3,913,272 - -0.1 3,913,272 - +0.8 3,913,377 - -0.8 3,913,385 + +0.3 3,913,400 + -0.2 3,913,401 - -0.3 3,913,401 - +1.4 3,913,453 + ECD_03714 0.11 -1.0 3,913,502 - ECD_03714 0.15 +0.7 3,913,502 - ECD_03714 0.15 +0.3 3,913,523 + ECD_03714 0.16 -0.2 3,913,523 + ECD_03714 0.16 -0.3 3,913,535 + ECD_03714 0.17 -0.1 3,913,679 - ECD_03714 0.26 -0.3 3,913,747 + ECD_03714 0.30 +0.5 3,913,747 + ECD_03714 0.30 -1.9 3,913,747 + ECD_03714 0.30 -1.7 3,913,747 + ECD_03714 0.30 +0.8 3,913,948 + ECD_03714 0.43 -0.8 3,914,079 - ECD_03714 0.52 -0.3 3,914,111 + ECD_03714 0.54 +0.3 3,914,111 + ECD_03714 0.54 +0.7 3,914,112 - ECD_03714 0.54 -0.3 3,914,186 - ECD_03714 0.58 -0.6 3,914,303 - ECD_03714 0.66 -1.3 3,914,387 - ECD_03714 0.71 -0.7 3,914,437 + ECD_03714 0.75 +0.8 3,914,542 + ECD_03714 0.81 -0.7 3,914,597 + ECD_03714 0.85 +0.5 3,914,618 - ECD_03714 0.86 +0.7 3,914,618 - ECD_03714 0.86 -2.2 3,914,618 - ECD_03714 0.86 -0.1 3,914,839 + -0.6 3,914,891 + +0.2 3,914,982 + +0.5 3,914,982 + +0.6 3,914,982 + +0.4 3,914,982 + +0.3 3,914,983 - +0.5 3,914,983 - +0.6 3,915,070 - ECD_03715 0.16 +0.5 3,915,118 + ECD_03715 0.22 -0.1 3,915,118 + ECD_03715 0.22 -0.3 3,915,233 - ECD_03715 0.35 +0.5 3,915,244 + ECD_03715 0.37 -0.5 3,915,244 + ECD_03715 0.37 +1.0 3,915,245 - ECD_03715 0.37 -0.4 3,915,245 - ECD_03715 0.37 -0.5 3,915,273 - ECD_03715 0.40 -1.7 3,915,333 + ECD_03715 0.47 +1.5 3,915,384 - ECD_03715 0.53 -0.4 3,915,384 - ECD_03715 0.53 +0.3 3,915,384 - ECD_03715 0.53 -0.8 3,915,384 - ECD_03715 0.53 -0.4 3,915,550 - ECD_03715 0.72 +0.9 3,915,637 + ECD_03715 0.82 +0.8 3,915,638 - ECD_03715 0.82 +0.0 3,915,638 - ECD_03715 0.82 -0.4 3,915,690 + ECD_03715 0.89 -0.9 3,915,691 - ECD_03715 0.89 +1.4 3,915,702 - ECD_03715 0.90 +0.3 3,915,710 + +0.8 3,915,711 - -1.3 3,915,720 + +0.6 3,915,720 + -0.7 3,915,720 + -0.3 3,915,783 + +2.0 3,915,814 + +0.9
Or see this region's nucleotide sequence