Strain Fitness in Escherichia coli BL21 around ECD_03714

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03713 and ECD_03714 overlap by 55 nucleotidesECD_03714 and ECD_03715 are separated by 94 nucleotidesECD_03715 and ECD_03716 are separated by 5 nucleotides ECD_03713: ECD_03713 - hypothetical protein, at 3,911,853 to 3,913,328 _03713 ECD_03714: ECD_03714 - hypothetical protein, at 3,913,274 to 3,914,833 _03714 ECD_03715: ECD_03715 - hypothetical protein, at 3,914,928 to 3,915,788 _03715 ECD_03716: ECD_03716 - hypothetical protein, at 3,915,794 to 3,916,462 _03716 Position (kb) 3913 3914 3915Strain fitness (log2 ratio) -2 -1 0 1 2at 3912.411 kb on - strand, within ECD_03713at 3912.579 kb on - strand, within ECD_03713at 3912.746 kb on + strand, within ECD_03713at 3912.752 kb on + strand, within ECD_03713at 3912.752 kb on + strand, within ECD_03713at 3912.835 kb on + strand, within ECD_03713at 3912.836 kb on - strand, within ECD_03713at 3912.933 kb on - strand, within ECD_03713at 3912.995 kb on + strand, within ECD_03713at 3912.995 kb on + strand, within ECD_03713at 3912.996 kb on - strand, within ECD_03713at 3913.031 kb on + strand, within ECD_03713at 3913.032 kb on - strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.212 kb on - strandat 3913.230 kb on + strandat 3913.263 kb on - strandat 3913.267 kb on - strandat 3913.271 kb on + strandat 3913.271 kb on + strandat 3913.271 kb on + strandat 3913.272 kb on - strandat 3913.272 kb on - strandat 3913.377 kb on - strandat 3913.385 kb on + strandat 3913.400 kb on + strandat 3913.401 kb on - strandat 3913.401 kb on - strandat 3913.453 kb on + strand, within ECD_03714at 3913.502 kb on - strand, within ECD_03714at 3913.502 kb on - strand, within ECD_03714at 3913.523 kb on + strand, within ECD_03714at 3913.523 kb on + strand, within ECD_03714at 3913.535 kb on + strand, within ECD_03714at 3913.679 kb on - strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.948 kb on + strand, within ECD_03714at 3914.079 kb on - strand, within ECD_03714at 3914.111 kb on + strand, within ECD_03714at 3914.111 kb on + strand, within ECD_03714at 3914.112 kb on - strand, within ECD_03714at 3914.186 kb on - strand, within ECD_03714at 3914.303 kb on - strand, within ECD_03714at 3914.387 kb on - strand, within ECD_03714at 3914.437 kb on + strand, within ECD_03714at 3914.542 kb on + strand, within ECD_03714at 3914.597 kb on + strand, within ECD_03714at 3914.618 kb on - strand, within ECD_03714at 3914.618 kb on - strand, within ECD_03714at 3914.618 kb on - strand, within ECD_03714at 3914.839 kb on + strandat 3914.891 kb on + strandat 3914.982 kb on + strandat 3914.982 kb on + strandat 3914.982 kb on + strandat 3914.982 kb on + strandat 3914.983 kb on - strandat 3914.983 kb on - strandat 3915.070 kb on - strand, within ECD_03715at 3915.118 kb on + strand, within ECD_03715at 3915.118 kb on + strand, within ECD_03715at 3915.233 kb on - strand, within ECD_03715at 3915.244 kb on + strand, within ECD_03715at 3915.244 kb on + strand, within ECD_03715at 3915.245 kb on - strand, within ECD_03715at 3915.245 kb on - strand, within ECD_03715at 3915.273 kb on - strand, within ECD_03715at 3915.333 kb on + strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.550 kb on - strand, within ECD_03715at 3915.637 kb on + strand, within ECD_03715at 3915.638 kb on - strand, within ECD_03715at 3915.638 kb on - strand, within ECD_03715at 3915.690 kb on + strand, within ECD_03715at 3915.691 kb on - strand, within ECD_03715at 3915.702 kb on - strand, within ECD_03715at 3915.710 kb on + strandat 3915.711 kb on - strandat 3915.720 kb on + strandat 3915.720 kb on + strandat 3915.720 kb on + strandat 3915.783 kb on + strandat 3915.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,912,411 - ECD_03713 0.38 -1.0
3,912,579 - ECD_03713 0.49 +0.5
3,912,746 + ECD_03713 0.61 +0.5
3,912,752 + ECD_03713 0.61 -0.8
3,912,752 + ECD_03713 0.61 -0.6
3,912,835 + ECD_03713 0.67 +0.3
3,912,836 - ECD_03713 0.67 -1.0
3,912,933 - ECD_03713 0.73 +1.0
3,912,995 + ECD_03713 0.77 -0.5
3,912,995 + ECD_03713 0.77 -1.2
3,912,996 - ECD_03713 0.77 -2.0
3,913,031 + ECD_03713 0.80 +1.9
3,913,032 - ECD_03713 0.80 +0.2
3,913,119 + ECD_03713 0.86 -0.3
3,913,119 + ECD_03713 0.86 +1.0
3,913,119 + ECD_03713 0.86 +0.4
3,913,119 + ECD_03713 0.86 +0.6
3,913,119 + ECD_03713 0.86 +0.3
3,913,120 - ECD_03713 0.86 +0.2
3,913,120 - ECD_03713 0.86 -0.1
3,913,120 - ECD_03713 0.86 -1.0
3,913,120 - ECD_03713 0.86 +0.4
3,913,120 - ECD_03713 0.86 -1.3
3,913,212 - -0.5
3,913,230 + -0.7
3,913,263 - -0.4
3,913,267 - -0.9
3,913,271 + +1.6
3,913,271 + +2.1
3,913,271 + +0.7
3,913,272 - -0.1
3,913,272 - +0.8
3,913,377 - -0.8
3,913,385 + +0.3
3,913,400 + -0.2
3,913,401 - -0.3
3,913,401 - +1.4
3,913,453 + ECD_03714 0.11 -1.0
3,913,502 - ECD_03714 0.15 +0.7
3,913,502 - ECD_03714 0.15 +0.3
3,913,523 + ECD_03714 0.16 -0.2
3,913,523 + ECD_03714 0.16 -0.3
3,913,535 + ECD_03714 0.17 -0.1
3,913,679 - ECD_03714 0.26 -0.3
3,913,747 + ECD_03714 0.30 +0.5
3,913,747 + ECD_03714 0.30 -1.9
3,913,747 + ECD_03714 0.30 -1.7
3,913,747 + ECD_03714 0.30 +0.8
3,913,948 + ECD_03714 0.43 -0.8
3,914,079 - ECD_03714 0.52 -0.3
3,914,111 + ECD_03714 0.54 +0.3
3,914,111 + ECD_03714 0.54 +0.7
3,914,112 - ECD_03714 0.54 -0.3
3,914,186 - ECD_03714 0.58 -0.6
3,914,303 - ECD_03714 0.66 -1.3
3,914,387 - ECD_03714 0.71 -0.7
3,914,437 + ECD_03714 0.75 +0.8
3,914,542 + ECD_03714 0.81 -0.7
3,914,597 + ECD_03714 0.85 +0.5
3,914,618 - ECD_03714 0.86 +0.7
3,914,618 - ECD_03714 0.86 -2.2
3,914,618 - ECD_03714 0.86 -0.1
3,914,839 + -0.6
3,914,891 + +0.2
3,914,982 + +0.5
3,914,982 + +0.6
3,914,982 + +0.4
3,914,982 + +0.3
3,914,983 - +0.5
3,914,983 - +0.6
3,915,070 - ECD_03715 0.16 +0.5
3,915,118 + ECD_03715 0.22 -0.1
3,915,118 + ECD_03715 0.22 -0.3
3,915,233 - ECD_03715 0.35 +0.5
3,915,244 + ECD_03715 0.37 -0.5
3,915,244 + ECD_03715 0.37 +1.0
3,915,245 - ECD_03715 0.37 -0.4
3,915,245 - ECD_03715 0.37 -0.5
3,915,273 - ECD_03715 0.40 -1.7
3,915,333 + ECD_03715 0.47 +1.5
3,915,384 - ECD_03715 0.53 -0.4
3,915,384 - ECD_03715 0.53 +0.3
3,915,384 - ECD_03715 0.53 -0.8
3,915,384 - ECD_03715 0.53 -0.4
3,915,550 - ECD_03715 0.72 +0.9
3,915,637 + ECD_03715 0.82 +0.8
3,915,638 - ECD_03715 0.82 +0.0
3,915,638 - ECD_03715 0.82 -0.4
3,915,690 + ECD_03715 0.89 -0.9
3,915,691 - ECD_03715 0.89 +1.4
3,915,702 - ECD_03715 0.90 +0.3
3,915,710 + +0.8
3,915,711 - -1.3
3,915,720 + +0.6
3,915,720 + -0.7
3,915,720 + -0.3
3,915,783 + +2.0
3,915,814 + +0.9

Or see this region's nucleotide sequence