Strain Fitness in Escherichia coli BL21 around ECD_03489

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03488 and ECD_03489 overlap by 4 nucleotidesECD_03489 and ECD_03490 are separated by 412 nucleotides ECD_03488: ECD_03488 - UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I, at 3,672,738 to 3,673,862 _03488 ECD_03489: ECD_03489 - lipopolysaccharide core biosynthesis protein, at 3,673,859 to 3,674,917 _03489 ECD_03490: ECD_03490 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase), at 3,675,330 to 3,676,607 _03490 Position (kb) 3673 3674 3675Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10 11at 3672.939 kb on - strand, within ECD_03488at 3673.042 kb on - strand, within ECD_03488at 3673.044 kb on + strand, within ECD_03488at 3673.168 kb on + strand, within ECD_03488at 3673.170 kb on + strand, within ECD_03488at 3673.171 kb on - strand, within ECD_03488at 3673.171 kb on - strand, within ECD_03488at 3673.270 kb on - strand, within ECD_03488at 3673.344 kb on - strand, within ECD_03488at 3673.354 kb on + strand, within ECD_03488at 3673.355 kb on - strand, within ECD_03488at 3673.399 kb on + strand, within ECD_03488at 3673.839 kb on - strandat 3673.942 kb on - strandat 3674.075 kb on - strand, within ECD_03489at 3674.075 kb on - strand, within ECD_03489at 3674.075 kb on - strand, within ECD_03489at 3674.075 kb on - strand, within ECD_03489at 3674.077 kb on + strand, within ECD_03489at 3674.286 kb on - strand, within ECD_03489at 3674.286 kb on - strand, within ECD_03489at 3674.286 kb on - strand, within ECD_03489at 3674.286 kb on - strand, within ECD_03489at 3674.286 kb on - strand, within ECD_03489at 3674.347 kb on + strand, within ECD_03489at 3674.364 kb on + strand, within ECD_03489at 3674.365 kb on - strand, within ECD_03489at 3674.489 kb on - strand, within ECD_03489at 3674.489 kb on - strand, within ECD_03489at 3674.569 kb on - strand, within ECD_03489at 3674.612 kb on + strand, within ECD_03489at 3674.614 kb on + strand, within ECD_03489at 3674.614 kb on + strand, within ECD_03489at 3674.614 kb on + strand, within ECD_03489at 3674.614 kb on + strand, within ECD_03489at 3674.615 kb on - strand, within ECD_03489at 3674.648 kb on - strand, within ECD_03489at 3674.656 kb on - strand, within ECD_03489at 3674.660 kb on - strand, within ECD_03489at 3674.660 kb on - strand, within ECD_03489at 3674.669 kb on + strand, within ECD_03489at 3674.670 kb on - strand, within ECD_03489at 3674.670 kb on - strand, within ECD_03489at 3674.670 kb on - strand, within ECD_03489at 3674.673 kb on - strand, within ECD_03489at 3674.839 kb on + strandat 3674.859 kb on - strandat 3674.994 kb on - strandat 3675.035 kb on - strandat 3675.035 kb on - strandat 3675.129 kb on + strandat 3675.167 kb on + strandat 3675.168 kb on - strandat 3675.243 kb on + strandat 3675.244 kb on - strandat 3675.247 kb on + strandat 3675.248 kb on - strandat 3675.285 kb on + strandat 3675.285 kb on + strandat 3675.289 kb on + strandat 3675.289 kb on + strandat 3675.289 kb on + strandat 3675.289 kb on + strandat 3675.289 kb on + strandat 3675.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,672,939 - ECD_03488 0.18 +7.5
3,673,042 - ECD_03488 0.27 +9.3
3,673,044 + ECD_03488 0.27 +2.4
3,673,168 + ECD_03488 0.38 +7.9
3,673,170 + ECD_03488 0.38 +7.8
3,673,171 - ECD_03488 0.38 +10.1
3,673,171 - ECD_03488 0.38 +9.7
3,673,270 - ECD_03488 0.47 +8.1
3,673,344 - ECD_03488 0.54 +8.1
3,673,354 + ECD_03488 0.55 +10.6
3,673,355 - ECD_03488 0.55 +9.1
3,673,399 + ECD_03488 0.59 +6.6
3,673,839 - +9.7
3,673,942 - +9.4
3,674,075 - ECD_03489 0.20 +8.7
3,674,075 - ECD_03489 0.20 +9.4
3,674,075 - ECD_03489 0.20 +8.9
3,674,075 - ECD_03489 0.20 +9.3
3,674,077 + ECD_03489 0.21 +8.8
3,674,286 - ECD_03489 0.40 +8.8
3,674,286 - ECD_03489 0.40 +8.6
3,674,286 - ECD_03489 0.40 +8.8
3,674,286 - ECD_03489 0.40 +9.0
3,674,286 - ECD_03489 0.40 +9.9
3,674,347 + ECD_03489 0.46 +8.6
3,674,364 + ECD_03489 0.48 +8.6
3,674,365 - ECD_03489 0.48 +8.7
3,674,489 - ECD_03489 0.59 +11.1
3,674,489 - ECD_03489 0.59 +9.7
3,674,569 - ECD_03489 0.67 +9.3
3,674,612 + ECD_03489 0.71 +10.2
3,674,614 + ECD_03489 0.71 +9.0
3,674,614 + ECD_03489 0.71 +7.3
3,674,614 + ECD_03489 0.71 +7.8
3,674,614 + ECD_03489 0.71 +7.8
3,674,615 - ECD_03489 0.71 +9.4
3,674,648 - ECD_03489 0.75 +9.7
3,674,656 - ECD_03489 0.75 +9.4
3,674,660 - ECD_03489 0.76 +9.9
3,674,660 - ECD_03489 0.76 +9.0
3,674,669 + ECD_03489 0.76 +9.5
3,674,670 - ECD_03489 0.77 +9.2
3,674,670 - ECD_03489 0.77 +9.7
3,674,670 - ECD_03489 0.77 +8.6
3,674,673 - ECD_03489 0.77 +9.4
3,674,839 + +9.8
3,674,859 - +9.0
3,674,994 - -1.6
3,675,035 - -0.3
3,675,035 - +1.2
3,675,129 + -1.3
3,675,167 + -1.3
3,675,168 - -0.2
3,675,243 + -1.4
3,675,244 - +0.0
3,675,247 + -0.1
3,675,248 - +0.6
3,675,285 + +1.7
3,675,285 + +0.6
3,675,289 + +3.1
3,675,289 + +1.1
3,675,289 + +0.8
3,675,289 + +2.0
3,675,289 + +2.5
3,675,293 + +1.6

Or see this region's nucleotide sequence