Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03357 and ECD_03358 are separated by 115 nucleotides ECD_03358 and ECD_03359 are separated by 254 nucleotides ECD_03359 and ECD_03360 are separated by 798 nucleotides
ECD_03357: ECD_03357 - acid-resistance protein, at 3,517,153 to 3,517,479
_03357
ECD_03358: ECD_03358 - stress response protein acid-resistance protein, at 3,517,595 to 3,517,927
_03358
ECD_03359: ECD_03359 - acid-resistance membrane protein, at 3,518,182 to 3,518,754
_03359
ECD_03360: ECD_03360 - gad regulon transcriptional activator, at 3,519,553 to 3,520,080
_03360
Position (kb) 3518
3519 Strain fitness (log2 ratio) -1
0
1 at 3517.290 kb on - strand, within ECD_03357 at 3517.682 kb on - strand, within ECD_03358 at 3517.946 kb on - strand at 3518.007 kb on - strand at 3518.188 kb on + strand at 3518.196 kb on + strand at 3518.591 kb on + strand, within ECD_03359 at 3518.591 kb on + strand, within ECD_03359 at 3518.699 kb on + strand at 3518.753 kb on - strand at 3518.753 kb on - strand at 3518.808 kb on - strand at 3518.880 kb on - strand at 3519.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,517,290 - ECD_03357 0.42 +0.0 3,517,682 - ECD_03358 0.26 +0.6 3,517,946 - +0.9 3,518,007 - +0.1 3,518,188 + -0.8 3,518,196 + +0.3 3,518,591 + ECD_03359 0.71 -0.6 3,518,591 + ECD_03359 0.71 -0.4 3,518,699 + +0.6 3,518,753 - -0.8 3,518,753 - +0.5 3,518,808 - +0.5 3,518,880 - -1.0 3,519,252 + +0.6
Or see this region's nucleotide sequence