Strain Fitness in Escherichia coli BL21 around ECD_03272

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03271 and ECD_03272 are separated by 3 nucleotidesECD_03272 and ECD_03273 are separated by 188 nucleotides ECD_03271: ECD_03271 - RNA 3'-terminal phosphate cyclase, at 3,416,129 to 3,417,145 _03271 ECD_03272: ECD_03272 - RNA-splicing ligase, at 3,417,149 to 3,418,375 _03272 ECD_03273: ECD_03273 - sigma 54-dependent transcriptional regulator of rtcBA expression, at 3,418,564 to 3,420,162 _03273 Position (kb) 3417 3418 3419Strain fitness (log2 ratio) -2 -1 0 1 2at 3416.165 kb on + strandat 3416.246 kb on - strand, within ECD_03271at 3416.246 kb on - strand, within ECD_03271at 3416.298 kb on + strand, within ECD_03271at 3416.299 kb on - strand, within ECD_03271at 3416.299 kb on - strand, within ECD_03271at 3416.444 kb on - strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.556 kb on - strand, within ECD_03271at 3416.558 kb on + strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.614 kb on + strand, within ECD_03271at 3416.615 kb on - strand, within ECD_03271at 3416.667 kb on + strand, within ECD_03271at 3416.851 kb on + strand, within ECD_03271at 3416.852 kb on - strand, within ECD_03271at 3416.852 kb on - strand, within ECD_03271at 3417.046 kb on + strandat 3417.046 kb on + strandat 3417.046 kb on + strandat 3417.158 kb on + strandat 3417.159 kb on - strandat 3417.159 kb on - strandat 3417.183 kb on + strandat 3417.183 kb on + strandat 3417.183 kb on + strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.187 kb on + strandat 3417.188 kb on - strandat 3417.230 kb on - strandat 3417.237 kb on + strandat 3417.238 kb on - strandat 3417.238 kb on - strandat 3417.238 kb on - strandat 3417.338 kb on - strand, within ECD_03272at 3417.492 kb on + strand, within ECD_03272at 3417.493 kb on - strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.681 kb on + strand, within ECD_03272at 3417.693 kb on + strand, within ECD_03272at 3417.694 kb on - strand, within ECD_03272at 3417.709 kb on + strand, within ECD_03272at 3417.783 kb on + strand, within ECD_03272at 3417.783 kb on + strand, within ECD_03272at 3417.783 kb on + strand, within ECD_03272at 3417.784 kb on - strand, within ECD_03272at 3417.829 kb on + strand, within ECD_03272at 3417.829 kb on + strand, within ECD_03272at 3417.904 kb on + strand, within ECD_03272at 3417.905 kb on - strand, within ECD_03272at 3417.905 kb on - strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3418.042 kb on + strand, within ECD_03272at 3418.229 kb on + strand, within ECD_03272at 3418.230 kb on - strand, within ECD_03272at 3418.230 kb on - strand, within ECD_03272at 3418.283 kb on - strandat 3418.548 kb on + strandat 3418.549 kb on - strandat 3418.556 kb on + strandat 3418.560 kb on + strandat 3418.560 kb on + strandat 3418.560 kb on + strandat 3418.561 kb on - strandat 3418.701 kb on - strandat 3418.727 kb on + strand, within ECD_03273at 3418.728 kb on - strand, within ECD_03273at 3418.886 kb on - strand, within ECD_03273at 3418.889 kb on + strand, within ECD_03273at 3418.890 kb on - strand, within ECD_03273at 3418.899 kb on + strand, within ECD_03273at 3418.973 kb on + strand, within ECD_03273at 3418.974 kb on - strand, within ECD_03273at 3419.045 kb on + strand, within ECD_03273at 3419.053 kb on + strand, within ECD_03273at 3419.351 kb on + strand, within ECD_03273at 3419.351 kb on + strand, within ECD_03273at 3419.351 kb on + strand, within ECD_03273at 3419.352 kb on - strand, within ECD_03273

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,416,165 + +0.2
3,416,246 - ECD_03271 0.12 -0.5
3,416,246 - ECD_03271 0.12 +0.4
3,416,298 + ECD_03271 0.17 +1.4
3,416,299 - ECD_03271 0.17 +0.7
3,416,299 - ECD_03271 0.17 +0.2
3,416,444 - ECD_03271 0.31 +0.4
3,416,555 + ECD_03271 0.42 +0.0
3,416,555 + ECD_03271 0.42 -0.0
3,416,555 + ECD_03271 0.42 +0.3
3,416,555 + ECD_03271 0.42 -0.1
3,416,556 - ECD_03271 0.42 +0.2
3,416,558 + ECD_03271 0.42 -0.2
3,416,559 - ECD_03271 0.42 +0.6
3,416,559 - ECD_03271 0.42 -0.2
3,416,559 - ECD_03271 0.42 -1.3
3,416,614 + ECD_03271 0.48 +0.1
3,416,615 - ECD_03271 0.48 +0.1
3,416,667 + ECD_03271 0.53 -0.9
3,416,851 + ECD_03271 0.71 -0.6
3,416,852 - ECD_03271 0.71 -0.2
3,416,852 - ECD_03271 0.71 -0.0
3,417,046 + +0.2
3,417,046 + -0.1
3,417,046 + -1.9
3,417,158 + +1.7
3,417,159 - +0.2
3,417,159 - +0.7
3,417,183 + -0.2
3,417,183 + +1.1
3,417,183 + +0.5
3,417,184 - -1.3
3,417,184 - -0.3
3,417,184 - +0.4
3,417,184 - +0.2
3,417,184 - +1.5
3,417,184 - +1.4
3,417,187 + +0.3
3,417,188 - -0.3
3,417,230 - +0.3
3,417,237 + +1.1
3,417,238 - -0.0
3,417,238 - +0.5
3,417,238 - +0.5
3,417,338 - ECD_03272 0.15 -0.9
3,417,492 + ECD_03272 0.28 +0.3
3,417,493 - ECD_03272 0.28 +1.0
3,417,528 + ECD_03272 0.31 -0.6
3,417,528 + ECD_03272 0.31 +0.7
3,417,528 + ECD_03272 0.31 -1.6
3,417,528 + ECD_03272 0.31 -1.7
3,417,528 + ECD_03272 0.31 -0.2
3,417,529 - ECD_03272 0.31 +0.6
3,417,529 - ECD_03272 0.31 +0.7
3,417,529 - ECD_03272 0.31 +0.6
3,417,529 - ECD_03272 0.31 +0.5
3,417,529 - ECD_03272 0.31 -0.6
3,417,529 - ECD_03272 0.31 +0.7
3,417,681 + ECD_03272 0.43 +0.9
3,417,693 + ECD_03272 0.44 -0.4
3,417,694 - ECD_03272 0.44 +0.1
3,417,709 + ECD_03272 0.46 +1.8
3,417,783 + ECD_03272 0.52 +1.0
3,417,783 + ECD_03272 0.52 -0.2
3,417,783 + ECD_03272 0.52 +1.1
3,417,784 - ECD_03272 0.52 -1.2
3,417,829 + ECD_03272 0.55 -1.7
3,417,829 + ECD_03272 0.55 +0.9
3,417,904 + ECD_03272 0.62 -0.4
3,417,905 - ECD_03272 0.62 -0.2
3,417,905 - ECD_03272 0.62 +0.0
3,417,906 + ECD_03272 0.62 +0.0
3,417,906 + ECD_03272 0.62 +1.1
3,417,906 + ECD_03272 0.62 +0.4
3,417,906 + ECD_03272 0.62 -0.5
3,417,907 - ECD_03272 0.62 +0.0
3,417,907 - ECD_03272 0.62 +0.3
3,417,907 - ECD_03272 0.62 -2.1
3,417,907 - ECD_03272 0.62 -0.5
3,417,907 - ECD_03272 0.62 +0.4
3,417,907 - ECD_03272 0.62 +1.7
3,418,042 + ECD_03272 0.73 +1.2
3,418,229 + ECD_03272 0.88 +0.5
3,418,230 - ECD_03272 0.88 -0.3
3,418,230 - ECD_03272 0.88 +0.1
3,418,283 - +0.7
3,418,548 + -0.8
3,418,549 - -0.6
3,418,556 + -0.3
3,418,560 + +0.7
3,418,560 + +1.7
3,418,560 + +0.6
3,418,561 - +0.1
3,418,701 - +2.4
3,418,727 + ECD_03273 0.10 -0.2
3,418,728 - ECD_03273 0.10 -0.3
3,418,886 - ECD_03273 0.20 +0.4
3,418,889 + ECD_03273 0.20 -0.7
3,418,890 - ECD_03273 0.20 -0.0
3,418,899 + ECD_03273 0.21 -1.0
3,418,973 + ECD_03273 0.26 -1.2
3,418,974 - ECD_03273 0.26 +1.8
3,419,045 + ECD_03273 0.30 -0.2
3,419,053 + ECD_03273 0.31 -0.2
3,419,351 + ECD_03273 0.49 +0.3
3,419,351 + ECD_03273 0.49 +0.1
3,419,351 + ECD_03273 0.49 +0.2
3,419,352 - ECD_03273 0.49 -1.1

Or see this region's nucleotide sequence