Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03271 and ECD_03272 are separated by 3 nucleotides ECD_03272 and ECD_03273 are separated by 188 nucleotides
ECD_03271: ECD_03271 - RNA 3'-terminal phosphate cyclase, at 3,416,129 to 3,417,145
_03271
ECD_03272: ECD_03272 - RNA-splicing ligase, at 3,417,149 to 3,418,375
_03272
ECD_03273: ECD_03273 - sigma 54-dependent transcriptional regulator of rtcBA expression, at 3,418,564 to 3,420,162
_03273
Position (kb)
3417
3418
3419 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3416.165 kb on + strand at 3416.246 kb on - strand, within ECD_03271 at 3416.246 kb on - strand, within ECD_03271 at 3416.298 kb on + strand, within ECD_03271 at 3416.299 kb on - strand, within ECD_03271 at 3416.299 kb on - strand, within ECD_03271 at 3416.444 kb on - strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.556 kb on - strand, within ECD_03271 at 3416.558 kb on + strand, within ECD_03271 at 3416.559 kb on - strand, within ECD_03271 at 3416.559 kb on - strand, within ECD_03271 at 3416.559 kb on - strand, within ECD_03271 at 3416.614 kb on + strand, within ECD_03271 at 3416.615 kb on - strand, within ECD_03271 at 3416.667 kb on + strand, within ECD_03271 at 3416.851 kb on + strand, within ECD_03271 at 3416.852 kb on - strand, within ECD_03271 at 3416.852 kb on - strand, within ECD_03271 at 3417.046 kb on + strand at 3417.046 kb on + strand at 3417.046 kb on + strand at 3417.158 kb on + strand at 3417.159 kb on - strand at 3417.159 kb on - strand at 3417.183 kb on + strand at 3417.183 kb on + strand at 3417.183 kb on + strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.187 kb on + strand at 3417.188 kb on - strand at 3417.230 kb on - strand at 3417.237 kb on + strand at 3417.238 kb on - strand at 3417.238 kb on - strand at 3417.238 kb on - strand at 3417.338 kb on - strand, within ECD_03272 at 3417.492 kb on + strand, within ECD_03272 at 3417.493 kb on - strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.681 kb on + strand, within ECD_03272 at 3417.693 kb on + strand, within ECD_03272 at 3417.694 kb on - strand, within ECD_03272 at 3417.709 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.784 kb on - strand, within ECD_03272 at 3417.829 kb on + strand, within ECD_03272 at 3417.829 kb on + strand, within ECD_03272 at 3417.904 kb on + strand, within ECD_03272 at 3417.905 kb on - strand, within ECD_03272 at 3417.905 kb on - strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3418.042 kb on + strand, within ECD_03272 at 3418.229 kb on + strand, within ECD_03272 at 3418.230 kb on - strand, within ECD_03272 at 3418.230 kb on - strand, within ECD_03272 at 3418.283 kb on - strand at 3418.548 kb on + strand at 3418.549 kb on - strand at 3418.556 kb on + strand at 3418.560 kb on + strand at 3418.560 kb on + strand at 3418.560 kb on + strand at 3418.561 kb on - strand at 3418.701 kb on - strand at 3418.727 kb on + strand, within ECD_03273 at 3418.728 kb on - strand, within ECD_03273 at 3418.886 kb on - strand, within ECD_03273 at 3418.889 kb on + strand, within ECD_03273 at 3418.890 kb on - strand, within ECD_03273 at 3418.899 kb on + strand, within ECD_03273 at 3418.973 kb on + strand, within ECD_03273 at 3418.974 kb on - strand, within ECD_03273 at 3419.045 kb on + strand, within ECD_03273 at 3419.053 kb on + strand, within ECD_03273 at 3419.351 kb on + strand, within ECD_03273 at 3419.351 kb on + strand, within ECD_03273 at 3419.351 kb on + strand, within ECD_03273 at 3419.352 kb on - strand, within ECD_03273
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,416,165 + +0.2 3,416,246 - ECD_03271 0.12 -0.5 3,416,246 - ECD_03271 0.12 +0.4 3,416,298 + ECD_03271 0.17 +1.4 3,416,299 - ECD_03271 0.17 +0.7 3,416,299 - ECD_03271 0.17 +0.2 3,416,444 - ECD_03271 0.31 +0.4 3,416,555 + ECD_03271 0.42 +0.0 3,416,555 + ECD_03271 0.42 -0.0 3,416,555 + ECD_03271 0.42 +0.3 3,416,555 + ECD_03271 0.42 -0.1 3,416,556 - ECD_03271 0.42 +0.2 3,416,558 + ECD_03271 0.42 -0.2 3,416,559 - ECD_03271 0.42 +0.6 3,416,559 - ECD_03271 0.42 -0.2 3,416,559 - ECD_03271 0.42 -1.3 3,416,614 + ECD_03271 0.48 +0.1 3,416,615 - ECD_03271 0.48 +0.1 3,416,667 + ECD_03271 0.53 -0.9 3,416,851 + ECD_03271 0.71 -0.6 3,416,852 - ECD_03271 0.71 -0.2 3,416,852 - ECD_03271 0.71 -0.0 3,417,046 + +0.2 3,417,046 + -0.1 3,417,046 + -1.9 3,417,158 + +1.7 3,417,159 - +0.2 3,417,159 - +0.7 3,417,183 + -0.2 3,417,183 + +1.1 3,417,183 + +0.5 3,417,184 - -1.3 3,417,184 - -0.3 3,417,184 - +0.4 3,417,184 - +0.2 3,417,184 - +1.5 3,417,184 - +1.4 3,417,187 + +0.3 3,417,188 - -0.3 3,417,230 - +0.3 3,417,237 + +1.1 3,417,238 - -0.0 3,417,238 - +0.5 3,417,238 - +0.5 3,417,338 - ECD_03272 0.15 -0.9 3,417,492 + ECD_03272 0.28 +0.3 3,417,493 - ECD_03272 0.28 +1.0 3,417,528 + ECD_03272 0.31 -0.6 3,417,528 + ECD_03272 0.31 +0.7 3,417,528 + ECD_03272 0.31 -1.6 3,417,528 + ECD_03272 0.31 -1.7 3,417,528 + ECD_03272 0.31 -0.2 3,417,529 - ECD_03272 0.31 +0.6 3,417,529 - ECD_03272 0.31 +0.7 3,417,529 - ECD_03272 0.31 +0.6 3,417,529 - ECD_03272 0.31 +0.5 3,417,529 - ECD_03272 0.31 -0.6 3,417,529 - ECD_03272 0.31 +0.7 3,417,681 + ECD_03272 0.43 +0.9 3,417,693 + ECD_03272 0.44 -0.4 3,417,694 - ECD_03272 0.44 +0.1 3,417,709 + ECD_03272 0.46 +1.8 3,417,783 + ECD_03272 0.52 +1.0 3,417,783 + ECD_03272 0.52 -0.2 3,417,783 + ECD_03272 0.52 +1.1 3,417,784 - ECD_03272 0.52 -1.2 3,417,829 + ECD_03272 0.55 -1.7 3,417,829 + ECD_03272 0.55 +0.9 3,417,904 + ECD_03272 0.62 -0.4 3,417,905 - ECD_03272 0.62 -0.2 3,417,905 - ECD_03272 0.62 +0.0 3,417,906 + ECD_03272 0.62 +0.0 3,417,906 + ECD_03272 0.62 +1.1 3,417,906 + ECD_03272 0.62 +0.4 3,417,906 + ECD_03272 0.62 -0.5 3,417,907 - ECD_03272 0.62 +0.0 3,417,907 - ECD_03272 0.62 +0.3 3,417,907 - ECD_03272 0.62 -2.1 3,417,907 - ECD_03272 0.62 -0.5 3,417,907 - ECD_03272 0.62 +0.4 3,417,907 - ECD_03272 0.62 +1.7 3,418,042 + ECD_03272 0.73 +1.2 3,418,229 + ECD_03272 0.88 +0.5 3,418,230 - ECD_03272 0.88 -0.3 3,418,230 - ECD_03272 0.88 +0.1 3,418,283 - +0.7 3,418,548 + -0.8 3,418,549 - -0.6 3,418,556 + -0.3 3,418,560 + +0.7 3,418,560 + +1.7 3,418,560 + +0.6 3,418,561 - +0.1 3,418,701 - +2.4 3,418,727 + ECD_03273 0.10 -0.2 3,418,728 - ECD_03273 0.10 -0.3 3,418,886 - ECD_03273 0.20 +0.4 3,418,889 + ECD_03273 0.20 -0.7 3,418,890 - ECD_03273 0.20 -0.0 3,418,899 + ECD_03273 0.21 -1.0 3,418,973 + ECD_03273 0.26 -1.2 3,418,974 - ECD_03273 0.26 +1.8 3,419,045 + ECD_03273 0.30 -0.2 3,419,053 + ECD_03273 0.31 -0.2 3,419,351 + ECD_03273 0.49 +0.3 3,419,351 + ECD_03273 0.49 +0.1 3,419,351 + ECD_03273 0.49 +0.2 3,419,352 - ECD_03273 0.49 -1.1
Or see this region's nucleotide sequence