Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03186 and ECD_03187 are separated by 28 nucleotides ECD_03187 and ECD_03188 are separated by 71 nucleotides ECD_03188 and ECD_03189 are separated by 168 nucleotides ECD_03189 and ECD_03190 are separated by 291 nucleotides
ECD_03186: ECD_03186 - bifunctional prepilin leader peptidase/ methylase, at 3,325,777 to 3,326,454
_03186
ECD_03187: ECD_03187 - bacterioferritin, iron storage and detoxification protein, at 3,326,483 to 3,326,959
_03187
ECD_03188: ECD_03188 - bacterioferritin-associated ferredoxin, at 3,327,031 to 3,327,225
_03188
ECD_03189: ECD_03189 - periplasmic endochitinase, at 3,327,394 to 3,329,454
_03189
ECD_03190: ECD_03190 - translation elongation factor EF-Tu 1, at 3,329,746 to 3,330,930
_03190
Position (kb)
3327
3328
3329
3330 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3326.420 kb on + strand at 3326.421 kb on - strand at 3326.431 kb on + strand at 3326.450 kb on - strand at 3326.450 kb on - strand at 3326.597 kb on + strand, within ECD_03187 at 3326.598 kb on - strand, within ECD_03187 at 3326.748 kb on - strand, within ECD_03187 at 3326.785 kb on + strand, within ECD_03187 at 3326.785 kb on + strand, within ECD_03187 at 3326.785 kb on + strand, within ECD_03187 at 3326.786 kb on - strand, within ECD_03187 at 3326.827 kb on - strand, within ECD_03187 at 3326.827 kb on - strand, within ECD_03187 at 3326.944 kb on + strand at 3326.994 kb on - strand at 3326.994 kb on - strand at 3327.010 kb on - strand at 3327.010 kb on - strand at 3327.065 kb on - strand, within ECD_03188 at 3327.207 kb on + strand at 3327.208 kb on - strand at 3327.208 kb on - strand at 3327.221 kb on + strand at 3327.222 kb on - strand at 3327.222 kb on - strand at 3327.222 kb on - strand at 3327.222 kb on - strand at 3327.225 kb on + strand at 3327.226 kb on - strand at 3327.226 kb on - strand at 3327.395 kb on + strand at 3327.396 kb on - strand at 3327.403 kb on - strand at 3327.520 kb on - strand at 3327.520 kb on - strand at 3327.537 kb on + strand at 3327.537 kb on + strand at 3327.537 kb on + strand at 3327.538 kb on - strand at 3327.581 kb on + strand at 3327.581 kb on + strand at 3327.581 kb on + strand at 3327.582 kb on - strand at 3327.582 kb on - strand at 3327.582 kb on - strand at 3327.636 kb on + strand, within ECD_03189 at 3327.636 kb on + strand, within ECD_03189 at 3327.637 kb on - strand, within ECD_03189 at 3327.661 kb on - strand, within ECD_03189 at 3327.721 kb on - strand, within ECD_03189 at 3327.744 kb on + strand, within ECD_03189 at 3327.773 kb on + strand, within ECD_03189 at 3327.773 kb on + strand, within ECD_03189 at 3327.774 kb on - strand, within ECD_03189 at 3327.774 kb on - strand, within ECD_03189 at 3327.891 kb on + strand, within ECD_03189 at 3327.897 kb on + strand, within ECD_03189 at 3327.898 kb on - strand, within ECD_03189 at 3327.921 kb on + strand, within ECD_03189 at 3327.922 kb on - strand, within ECD_03189 at 3327.922 kb on - strand, within ECD_03189 at 3327.922 kb on - strand, within ECD_03189 at 3327.960 kb on + strand, within ECD_03189 at 3327.960 kb on + strand, within ECD_03189 at 3327.960 kb on + strand, within ECD_03189 at 3327.961 kb on - strand, within ECD_03189 at 3327.961 kb on - strand, within ECD_03189 at 3328.037 kb on + strand, within ECD_03189 at 3328.037 kb on + strand, within ECD_03189 at 3328.038 kb on - strand, within ECD_03189 at 3328.040 kb on + strand, within ECD_03189 at 3328.040 kb on + strand, within ECD_03189 at 3328.040 kb on + strand, within ECD_03189 at 3328.041 kb on - strand, within ECD_03189 at 3328.061 kb on - strand, within ECD_03189 at 3328.061 kb on - strand, within ECD_03189 at 3328.068 kb on + strand, within ECD_03189 at 3328.069 kb on - strand, within ECD_03189 at 3328.177 kb on - strand, within ECD_03189 at 3328.181 kb on + strand, within ECD_03189 at 3328.313 kb on + strand, within ECD_03189 at 3328.313 kb on + strand, within ECD_03189 at 3328.313 kb on + strand, within ECD_03189 at 3328.314 kb on - strand, within ECD_03189 at 3328.322 kb on + strand, within ECD_03189 at 3328.323 kb on - strand, within ECD_03189 at 3328.353 kb on + strand, within ECD_03189 at 3328.357 kb on + strand, within ECD_03189 at 3328.357 kb on + strand, within ECD_03189 at 3328.358 kb on - strand, within ECD_03189 at 3328.358 kb on - strand, within ECD_03189 at 3328.358 kb on - strand, within ECD_03189 at 3328.448 kb on + strand, within ECD_03189 at 3328.448 kb on + strand, within ECD_03189 at 3328.449 kb on - strand, within ECD_03189 at 3328.477 kb on - strand, within ECD_03189 at 3328.487 kb on + strand, within ECD_03189 at 3328.488 kb on - strand, within ECD_03189 at 3328.503 kb on + strand, within ECD_03189 at 3328.536 kb on + strand, within ECD_03189 at 3328.537 kb on - strand, within ECD_03189 at 3328.538 kb on + strand, within ECD_03189 at 3328.538 kb on + strand, within ECD_03189 at 3328.575 kb on + strand, within ECD_03189 at 3328.646 kb on + strand, within ECD_03189 at 3328.647 kb on - strand, within ECD_03189 at 3328.647 kb on - strand, within ECD_03189 at 3328.647 kb on - strand, within ECD_03189 at 3328.685 kb on + strand, within ECD_03189 at 3328.685 kb on + strand, within ECD_03189 at 3328.686 kb on - strand, within ECD_03189 at 3328.721 kb on + strand, within ECD_03189 at 3328.786 kb on - strand, within ECD_03189 at 3328.787 kb on + strand, within ECD_03189 at 3328.787 kb on + strand, within ECD_03189 at 3328.788 kb on - strand, within ECD_03189 at 3328.788 kb on - strand, within ECD_03189 at 3328.800 kb on + strand, within ECD_03189 at 3328.803 kb on - strand, within ECD_03189 at 3328.803 kb on - strand, within ECD_03189 at 3328.807 kb on + strand, within ECD_03189 at 3328.924 kb on - strand, within ECD_03189 at 3328.929 kb on + strand, within ECD_03189 at 3328.930 kb on - strand, within ECD_03189 at 3328.930 kb on - strand, within ECD_03189 at 3328.990 kb on - strand, within ECD_03189 at 3329.197 kb on - strand, within ECD_03189 at 3329.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,326,420 + +0.8 3,326,421 - -0.6 3,326,431 + -0.9 3,326,450 - +1.4 3,326,450 - -0.5 3,326,597 + ECD_03187 0.24 +0.2 3,326,598 - ECD_03187 0.24 +0.8 3,326,748 - ECD_03187 0.56 +0.2 3,326,785 + ECD_03187 0.63 -0.0 3,326,785 + ECD_03187 0.63 -0.4 3,326,785 + ECD_03187 0.63 -0.6 3,326,786 - ECD_03187 0.64 +0.6 3,326,827 - ECD_03187 0.72 +1.8 3,326,827 - ECD_03187 0.72 -1.8 3,326,944 + -0.8 3,326,994 - -0.3 3,326,994 - -0.9 3,327,010 - +0.1 3,327,010 - +0.2 3,327,065 - ECD_03188 0.17 +1.5 3,327,207 + -0.1 3,327,208 - +1.0 3,327,208 - -1.7 3,327,221 + +0.9 3,327,222 - +0.1 3,327,222 - +0.4 3,327,222 - +0.1 3,327,222 - -0.9 3,327,225 + -0.3 3,327,226 - -0.3 3,327,226 - -0.4 3,327,395 + -0.2 3,327,396 - -0.8 3,327,403 - -0.2 3,327,520 - -1.3 3,327,520 - -2.0 3,327,537 + -0.4 3,327,537 + +0.0 3,327,537 + +0.4 3,327,538 - +0.1 3,327,581 + +2.1 3,327,581 + -0.1 3,327,581 + +0.9 3,327,582 - +1.9 3,327,582 - +1.2 3,327,582 - +0.4 3,327,636 + ECD_03189 0.12 -0.5 3,327,636 + ECD_03189 0.12 -0.4 3,327,637 - ECD_03189 0.12 +1.3 3,327,661 - ECD_03189 0.13 +0.7 3,327,721 - ECD_03189 0.16 -1.1 3,327,744 + ECD_03189 0.17 +1.2 3,327,773 + ECD_03189 0.18 +2.2 3,327,773 + ECD_03189 0.18 +0.7 3,327,774 - ECD_03189 0.18 +1.5 3,327,774 - ECD_03189 0.18 -1.0 3,327,891 + ECD_03189 0.24 +0.7 3,327,897 + ECD_03189 0.24 +0.3 3,327,898 - ECD_03189 0.24 +0.8 3,327,921 + ECD_03189 0.26 -0.1 3,327,922 - ECD_03189 0.26 +0.0 3,327,922 - ECD_03189 0.26 +0.2 3,327,922 - ECD_03189 0.26 +0.9 3,327,960 + ECD_03189 0.27 +0.1 3,327,960 + ECD_03189 0.27 -1.0 3,327,960 + ECD_03189 0.27 +0.2 3,327,961 - ECD_03189 0.28 +1.0 3,327,961 - ECD_03189 0.28 -0.5 3,328,037 + ECD_03189 0.31 +1.1 3,328,037 + ECD_03189 0.31 -0.9 3,328,038 - ECD_03189 0.31 -0.9 3,328,040 + ECD_03189 0.31 +0.2 3,328,040 + ECD_03189 0.31 +0.2 3,328,040 + ECD_03189 0.31 -1.1 3,328,041 - ECD_03189 0.31 +0.3 3,328,061 - ECD_03189 0.32 -0.1 3,328,061 - ECD_03189 0.32 +0.4 3,328,068 + ECD_03189 0.33 -0.5 3,328,069 - ECD_03189 0.33 -0.9 3,328,177 - ECD_03189 0.38 +0.9 3,328,181 + ECD_03189 0.38 -0.4 3,328,313 + ECD_03189 0.45 +0.4 3,328,313 + ECD_03189 0.45 -1.5 3,328,313 + ECD_03189 0.45 -0.9 3,328,314 - ECD_03189 0.45 +0.5 3,328,322 + ECD_03189 0.45 +0.9 3,328,323 - ECD_03189 0.45 +1.7 3,328,353 + ECD_03189 0.47 -0.5 3,328,357 + ECD_03189 0.47 -1.5 3,328,357 + ECD_03189 0.47 +0.2 3,328,358 - ECD_03189 0.47 -0.2 3,328,358 - ECD_03189 0.47 +0.5 3,328,358 - ECD_03189 0.47 -0.1 3,328,448 + ECD_03189 0.51 +0.8 3,328,448 + ECD_03189 0.51 -0.4 3,328,449 - ECD_03189 0.51 +2.0 3,328,477 - ECD_03189 0.53 +1.4 3,328,487 + ECD_03189 0.53 -0.2 3,328,488 - ECD_03189 0.53 -0.5 3,328,503 + ECD_03189 0.54 -0.7 3,328,536 + ECD_03189 0.55 +0.2 3,328,537 - ECD_03189 0.55 +0.9 3,328,538 + ECD_03189 0.56 +1.2 3,328,538 + ECD_03189 0.56 -0.6 3,328,575 + ECD_03189 0.57 +0.9 3,328,646 + ECD_03189 0.61 -0.4 3,328,647 - ECD_03189 0.61 +0.7 3,328,647 - ECD_03189 0.61 -0.4 3,328,647 - ECD_03189 0.61 +0.6 3,328,685 + ECD_03189 0.63 +0.5 3,328,685 + ECD_03189 0.63 +1.3 3,328,686 - ECD_03189 0.63 +0.1 3,328,721 + ECD_03189 0.64 +1.6 3,328,786 - ECD_03189 0.68 -0.0 3,328,787 + ECD_03189 0.68 -0.4 3,328,787 + ECD_03189 0.68 +0.0 3,328,788 - ECD_03189 0.68 +0.5 3,328,788 - ECD_03189 0.68 -2.4 3,328,800 + ECD_03189 0.68 +0.6 3,328,803 - ECD_03189 0.68 -0.5 3,328,803 - ECD_03189 0.68 -1.0 3,328,807 + ECD_03189 0.69 -1.3 3,328,924 - ECD_03189 0.74 -0.6 3,328,929 + ECD_03189 0.74 -2.0 3,328,930 - ECD_03189 0.75 +1.3 3,328,930 - ECD_03189 0.75 -1.7 3,328,990 - ECD_03189 0.77 +2.2 3,329,197 - ECD_03189 0.87 -0.2 3,329,510 + -1.2
Or see this region's nucleotide sequence