Strain Fitness in Escherichia coli BL21 around ECD_03189

Experiment: EV116

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03186 and ECD_03187 are separated by 28 nucleotidesECD_03187 and ECD_03188 are separated by 71 nucleotidesECD_03188 and ECD_03189 are separated by 168 nucleotidesECD_03189 and ECD_03190 are separated by 291 nucleotides ECD_03186: ECD_03186 - bifunctional prepilin leader peptidase/ methylase, at 3,325,777 to 3,326,454 _03186 ECD_03187: ECD_03187 - bacterioferritin, iron storage and detoxification protein, at 3,326,483 to 3,326,959 _03187 ECD_03188: ECD_03188 - bacterioferritin-associated ferredoxin, at 3,327,031 to 3,327,225 _03188 ECD_03189: ECD_03189 - periplasmic endochitinase, at 3,327,394 to 3,329,454 _03189 ECD_03190: ECD_03190 - translation elongation factor EF-Tu 1, at 3,329,746 to 3,330,930 _03190 Position (kb) 3327 3328 3329 3330Strain fitness (log2 ratio) -2 -1 0 1 2at 3326.420 kb on + strandat 3326.421 kb on - strandat 3326.431 kb on + strandat 3326.450 kb on - strandat 3326.450 kb on - strandat 3326.597 kb on + strand, within ECD_03187at 3326.598 kb on - strand, within ECD_03187at 3326.748 kb on - strand, within ECD_03187at 3326.785 kb on + strand, within ECD_03187at 3326.785 kb on + strand, within ECD_03187at 3326.785 kb on + strand, within ECD_03187at 3326.786 kb on - strand, within ECD_03187at 3326.827 kb on - strand, within ECD_03187at 3326.827 kb on - strand, within ECD_03187at 3326.944 kb on + strandat 3326.994 kb on - strandat 3326.994 kb on - strandat 3327.010 kb on - strandat 3327.010 kb on - strandat 3327.065 kb on - strand, within ECD_03188at 3327.207 kb on + strandat 3327.208 kb on - strandat 3327.208 kb on - strandat 3327.221 kb on + strandat 3327.222 kb on - strandat 3327.222 kb on - strandat 3327.222 kb on - strandat 3327.222 kb on - strandat 3327.225 kb on + strandat 3327.226 kb on - strandat 3327.226 kb on - strandat 3327.395 kb on + strandat 3327.396 kb on - strandat 3327.403 kb on - strandat 3327.520 kb on - strandat 3327.520 kb on - strandat 3327.537 kb on + strandat 3327.537 kb on + strandat 3327.537 kb on + strandat 3327.538 kb on - strandat 3327.581 kb on + strandat 3327.581 kb on + strandat 3327.581 kb on + strandat 3327.582 kb on - strandat 3327.582 kb on - strandat 3327.582 kb on - strandat 3327.636 kb on + strand, within ECD_03189at 3327.636 kb on + strand, within ECD_03189at 3327.637 kb on - strand, within ECD_03189at 3327.661 kb on - strand, within ECD_03189at 3327.721 kb on - strand, within ECD_03189at 3327.744 kb on + strand, within ECD_03189at 3327.773 kb on + strand, within ECD_03189at 3327.773 kb on + strand, within ECD_03189at 3327.774 kb on - strand, within ECD_03189at 3327.774 kb on - strand, within ECD_03189at 3327.891 kb on + strand, within ECD_03189at 3327.897 kb on + strand, within ECD_03189at 3327.898 kb on - strand, within ECD_03189at 3327.921 kb on + strand, within ECD_03189at 3327.922 kb on - strand, within ECD_03189at 3327.922 kb on - strand, within ECD_03189at 3327.922 kb on - strand, within ECD_03189at 3327.960 kb on + strand, within ECD_03189at 3327.960 kb on + strand, within ECD_03189at 3327.960 kb on + strand, within ECD_03189at 3327.961 kb on - strand, within ECD_03189at 3327.961 kb on - strand, within ECD_03189at 3328.037 kb on + strand, within ECD_03189at 3328.037 kb on + strand, within ECD_03189at 3328.038 kb on - strand, within ECD_03189at 3328.040 kb on + strand, within ECD_03189at 3328.040 kb on + strand, within ECD_03189at 3328.040 kb on + strand, within ECD_03189at 3328.041 kb on - strand, within ECD_03189at 3328.061 kb on - strand, within ECD_03189at 3328.061 kb on - strand, within ECD_03189at 3328.068 kb on + strand, within ECD_03189at 3328.069 kb on - strand, within ECD_03189at 3328.177 kb on - strand, within ECD_03189at 3328.181 kb on + strand, within ECD_03189at 3328.313 kb on + strand, within ECD_03189at 3328.313 kb on + strand, within ECD_03189at 3328.313 kb on + strand, within ECD_03189at 3328.314 kb on - strand, within ECD_03189at 3328.322 kb on + strand, within ECD_03189at 3328.323 kb on - strand, within ECD_03189at 3328.353 kb on + strand, within ECD_03189at 3328.357 kb on + strand, within ECD_03189at 3328.357 kb on + strand, within ECD_03189at 3328.358 kb on - strand, within ECD_03189at 3328.358 kb on - strand, within ECD_03189at 3328.358 kb on - strand, within ECD_03189at 3328.448 kb on + strand, within ECD_03189at 3328.448 kb on + strand, within ECD_03189at 3328.449 kb on - strand, within ECD_03189at 3328.477 kb on - strand, within ECD_03189at 3328.487 kb on + strand, within ECD_03189at 3328.488 kb on - strand, within ECD_03189at 3328.503 kb on + strand, within ECD_03189at 3328.536 kb on + strand, within ECD_03189at 3328.537 kb on - strand, within ECD_03189at 3328.538 kb on + strand, within ECD_03189at 3328.538 kb on + strand, within ECD_03189at 3328.575 kb on + strand, within ECD_03189at 3328.646 kb on + strand, within ECD_03189at 3328.647 kb on - strand, within ECD_03189at 3328.647 kb on - strand, within ECD_03189at 3328.647 kb on - strand, within ECD_03189at 3328.685 kb on + strand, within ECD_03189at 3328.685 kb on + strand, within ECD_03189at 3328.686 kb on - strand, within ECD_03189at 3328.721 kb on + strand, within ECD_03189at 3328.786 kb on - strand, within ECD_03189at 3328.787 kb on + strand, within ECD_03189at 3328.787 kb on + strand, within ECD_03189at 3328.788 kb on - strand, within ECD_03189at 3328.788 kb on - strand, within ECD_03189at 3328.800 kb on + strand, within ECD_03189at 3328.803 kb on - strand, within ECD_03189at 3328.803 kb on - strand, within ECD_03189at 3328.807 kb on + strand, within ECD_03189at 3328.924 kb on - strand, within ECD_03189at 3328.929 kb on + strand, within ECD_03189at 3328.930 kb on - strand, within ECD_03189at 3328.930 kb on - strand, within ECD_03189at 3328.990 kb on - strand, within ECD_03189at 3329.197 kb on - strand, within ECD_03189at 3329.510 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV116
remove
3,326,420 + +0.8
3,326,421 - -0.6
3,326,431 + -0.9
3,326,450 - +1.4
3,326,450 - -0.5
3,326,597 + ECD_03187 0.24 +0.2
3,326,598 - ECD_03187 0.24 +0.8
3,326,748 - ECD_03187 0.56 +0.2
3,326,785 + ECD_03187 0.63 -0.0
3,326,785 + ECD_03187 0.63 -0.4
3,326,785 + ECD_03187 0.63 -0.6
3,326,786 - ECD_03187 0.64 +0.6
3,326,827 - ECD_03187 0.72 +1.8
3,326,827 - ECD_03187 0.72 -1.8
3,326,944 + -0.8
3,326,994 - -0.3
3,326,994 - -0.9
3,327,010 - +0.1
3,327,010 - +0.2
3,327,065 - ECD_03188 0.17 +1.5
3,327,207 + -0.1
3,327,208 - +1.0
3,327,208 - -1.7
3,327,221 + +0.9
3,327,222 - +0.1
3,327,222 - +0.4
3,327,222 - +0.1
3,327,222 - -0.9
3,327,225 + -0.3
3,327,226 - -0.3
3,327,226 - -0.4
3,327,395 + -0.2
3,327,396 - -0.8
3,327,403 - -0.2
3,327,520 - -1.3
3,327,520 - -2.0
3,327,537 + -0.4
3,327,537 + +0.0
3,327,537 + +0.4
3,327,538 - +0.1
3,327,581 + +2.1
3,327,581 + -0.1
3,327,581 + +0.9
3,327,582 - +1.9
3,327,582 - +1.2
3,327,582 - +0.4
3,327,636 + ECD_03189 0.12 -0.5
3,327,636 + ECD_03189 0.12 -0.4
3,327,637 - ECD_03189 0.12 +1.3
3,327,661 - ECD_03189 0.13 +0.7
3,327,721 - ECD_03189 0.16 -1.1
3,327,744 + ECD_03189 0.17 +1.2
3,327,773 + ECD_03189 0.18 +2.2
3,327,773 + ECD_03189 0.18 +0.7
3,327,774 - ECD_03189 0.18 +1.5
3,327,774 - ECD_03189 0.18 -1.0
3,327,891 + ECD_03189 0.24 +0.7
3,327,897 + ECD_03189 0.24 +0.3
3,327,898 - ECD_03189 0.24 +0.8
3,327,921 + ECD_03189 0.26 -0.1
3,327,922 - ECD_03189 0.26 +0.0
3,327,922 - ECD_03189 0.26 +0.2
3,327,922 - ECD_03189 0.26 +0.9
3,327,960 + ECD_03189 0.27 +0.1
3,327,960 + ECD_03189 0.27 -1.0
3,327,960 + ECD_03189 0.27 +0.2
3,327,961 - ECD_03189 0.28 +1.0
3,327,961 - ECD_03189 0.28 -0.5
3,328,037 + ECD_03189 0.31 +1.1
3,328,037 + ECD_03189 0.31 -0.9
3,328,038 - ECD_03189 0.31 -0.9
3,328,040 + ECD_03189 0.31 +0.2
3,328,040 + ECD_03189 0.31 +0.2
3,328,040 + ECD_03189 0.31 -1.1
3,328,041 - ECD_03189 0.31 +0.3
3,328,061 - ECD_03189 0.32 -0.1
3,328,061 - ECD_03189 0.32 +0.4
3,328,068 + ECD_03189 0.33 -0.5
3,328,069 - ECD_03189 0.33 -0.9
3,328,177 - ECD_03189 0.38 +0.9
3,328,181 + ECD_03189 0.38 -0.4
3,328,313 + ECD_03189 0.45 +0.4
3,328,313 + ECD_03189 0.45 -1.5
3,328,313 + ECD_03189 0.45 -0.9
3,328,314 - ECD_03189 0.45 +0.5
3,328,322 + ECD_03189 0.45 +0.9
3,328,323 - ECD_03189 0.45 +1.7
3,328,353 + ECD_03189 0.47 -0.5
3,328,357 + ECD_03189 0.47 -1.5
3,328,357 + ECD_03189 0.47 +0.2
3,328,358 - ECD_03189 0.47 -0.2
3,328,358 - ECD_03189 0.47 +0.5
3,328,358 - ECD_03189 0.47 -0.1
3,328,448 + ECD_03189 0.51 +0.8
3,328,448 + ECD_03189 0.51 -0.4
3,328,449 - ECD_03189 0.51 +2.0
3,328,477 - ECD_03189 0.53 +1.4
3,328,487 + ECD_03189 0.53 -0.2
3,328,488 - ECD_03189 0.53 -0.5
3,328,503 + ECD_03189 0.54 -0.7
3,328,536 + ECD_03189 0.55 +0.2
3,328,537 - ECD_03189 0.55 +0.9
3,328,538 + ECD_03189 0.56 +1.2
3,328,538 + ECD_03189 0.56 -0.6
3,328,575 + ECD_03189 0.57 +0.9
3,328,646 + ECD_03189 0.61 -0.4
3,328,647 - ECD_03189 0.61 +0.7
3,328,647 - ECD_03189 0.61 -0.4
3,328,647 - ECD_03189 0.61 +0.6
3,328,685 + ECD_03189 0.63 +0.5
3,328,685 + ECD_03189 0.63 +1.3
3,328,686 - ECD_03189 0.63 +0.1
3,328,721 + ECD_03189 0.64 +1.6
3,328,786 - ECD_03189 0.68 -0.0
3,328,787 + ECD_03189 0.68 -0.4
3,328,787 + ECD_03189 0.68 +0.0
3,328,788 - ECD_03189 0.68 +0.5
3,328,788 - ECD_03189 0.68 -2.4
3,328,800 + ECD_03189 0.68 +0.6
3,328,803 - ECD_03189 0.68 -0.5
3,328,803 - ECD_03189 0.68 -1.0
3,328,807 + ECD_03189 0.69 -1.3
3,328,924 - ECD_03189 0.74 -0.6
3,328,929 + ECD_03189 0.74 -2.0
3,328,930 - ECD_03189 0.75 +1.3
3,328,930 - ECD_03189 0.75 -1.7
3,328,990 - ECD_03189 0.77 +2.2
3,329,197 - ECD_03189 0.87 -0.2
3,329,510 + -1.2

Or see this region's nucleotide sequence