Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03094 and ECD_03095 are separated by 89 nucleotides ECD_03095 and ECD_03096 are separated by 61 nucleotides
ECD_03094: ECD_03094 - serine endoprotease, periplasmic, at 3,241,906 to 3,243,273
_03094
ECD_03095: ECD_03095 - serine endoprotease, periplasmic, at 3,243,363 to 3,244,430
_03095
ECD_03096: ECD_03096 - malate dehydrogenase, NAD(P)-binding, at 3,244,492 to 3,245,430
_03096
Position (kb)
3243
3244
3245 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3242.471 kb on + strand, within ECD_03094 at 3242.472 kb on - strand, within ECD_03094 at 3242.561 kb on + strand, within ECD_03094 at 3242.561 kb on + strand, within ECD_03094 at 3242.580 kb on - strand, within ECD_03094 at 3242.652 kb on + strand, within ECD_03094 at 3242.653 kb on - strand, within ECD_03094 at 3242.842 kb on - strand, within ECD_03094 at 3242.844 kb on + strand, within ECD_03094 at 3242.844 kb on + strand, within ECD_03094 at 3242.847 kb on + strand, within ECD_03094 at 3242.874 kb on + strand, within ECD_03094 at 3242.967 kb on - strand, within ECD_03094 at 3243.060 kb on - strand, within ECD_03094 at 3243.060 kb on - strand, within ECD_03094 at 3243.078 kb on + strand, within ECD_03094 at 3243.078 kb on + strand, within ECD_03094 at 3243.081 kb on + strand, within ECD_03094 at 3243.082 kb on - strand, within ECD_03094 at 3243.193 kb on - strand at 3243.236 kb on + strand at 3243.256 kb on + strand at 3243.256 kb on + strand at 3243.256 kb on + strand at 3243.256 kb on + strand at 3243.256 kb on + strand at 3243.257 kb on - strand at 3243.314 kb on + strand at 3243.324 kb on + strand at 3243.379 kb on + strand at 3244.428 kb on + strand at 3244.428 kb on + strand at 3244.494 kb on - strand at 3244.494 kb on - strand at 3244.753 kb on - strand, within ECD_03096 at 3245.082 kb on + strand, within ECD_03096 at 3245.086 kb on - strand, within ECD_03096 at 3245.334 kb on - strand, within ECD_03096 at 3245.378 kb on - strand at 3245.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,242,471 + ECD_03094 0.41 -0.9 3,242,472 - ECD_03094 0.41 -0.5 3,242,561 + ECD_03094 0.48 -1.5 3,242,561 + ECD_03094 0.48 -0.3 3,242,580 - ECD_03094 0.49 +1.2 3,242,652 + ECD_03094 0.55 -0.7 3,242,653 - ECD_03094 0.55 -1.8 3,242,842 - ECD_03094 0.68 -2.1 3,242,844 + ECD_03094 0.69 -0.0 3,242,844 + ECD_03094 0.69 -0.2 3,242,847 + ECD_03094 0.69 +0.1 3,242,874 + ECD_03094 0.71 +0.1 3,242,967 - ECD_03094 0.78 +1.4 3,243,060 - ECD_03094 0.84 -0.2 3,243,060 - ECD_03094 0.84 +0.5 3,243,078 + ECD_03094 0.86 -0.0 3,243,078 + ECD_03094 0.86 +0.7 3,243,081 + ECD_03094 0.86 -0.6 3,243,082 - ECD_03094 0.86 -0.6 3,243,193 - -1.0 3,243,236 + +0.3 3,243,256 + -2.9 3,243,256 + +1.1 3,243,256 + +1.0 3,243,256 + +0.7 3,243,256 + +0.5 3,243,257 - -1.2 3,243,314 + +1.2 3,243,324 + +0.2 3,243,379 + -1.1 3,244,428 + -0.8 3,244,428 + -0.3 3,244,494 - +0.9 3,244,494 - +0.4 3,244,753 - ECD_03096 0.28 -2.8 3,245,082 + ECD_03096 0.63 -0.2 3,245,086 - ECD_03096 0.63 -0.4 3,245,334 - ECD_03096 0.90 -0.4 3,245,378 - -0.1 3,245,378 - -1.0
Or see this region's nucleotide sequence