Strain Fitness in Escherichia coli BL21 around ECD_03095

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03094 and ECD_03095 are separated by 89 nucleotidesECD_03095 and ECD_03096 are separated by 61 nucleotides ECD_03094: ECD_03094 - serine endoprotease, periplasmic, at 3,241,906 to 3,243,273 _03094 ECD_03095: ECD_03095 - serine endoprotease, periplasmic, at 3,243,363 to 3,244,430 _03095 ECD_03096: ECD_03096 - malate dehydrogenase, NAD(P)-binding, at 3,244,492 to 3,245,430 _03096 Position (kb) 3243 3244 3245Strain fitness (log2 ratio) -3 -2 -1 0 1at 3242.471 kb on + strand, within ECD_03094at 3242.472 kb on - strand, within ECD_03094at 3242.561 kb on + strand, within ECD_03094at 3242.561 kb on + strand, within ECD_03094at 3242.580 kb on - strand, within ECD_03094at 3242.652 kb on + strand, within ECD_03094at 3242.653 kb on - strand, within ECD_03094at 3242.842 kb on - strand, within ECD_03094at 3242.844 kb on + strand, within ECD_03094at 3242.844 kb on + strand, within ECD_03094at 3242.847 kb on + strand, within ECD_03094at 3242.874 kb on + strand, within ECD_03094at 3242.967 kb on - strand, within ECD_03094at 3243.060 kb on - strand, within ECD_03094at 3243.060 kb on - strand, within ECD_03094at 3243.078 kb on + strand, within ECD_03094at 3243.078 kb on + strand, within ECD_03094at 3243.081 kb on + strand, within ECD_03094at 3243.082 kb on - strand, within ECD_03094at 3243.193 kb on - strandat 3243.236 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.257 kb on - strandat 3243.314 kb on + strandat 3243.324 kb on + strandat 3243.379 kb on + strandat 3244.428 kb on + strandat 3244.428 kb on + strandat 3244.494 kb on - strandat 3244.494 kb on - strandat 3244.753 kb on - strand, within ECD_03096at 3245.082 kb on + strand, within ECD_03096at 3245.086 kb on - strand, within ECD_03096at 3245.334 kb on - strand, within ECD_03096at 3245.378 kb on - strandat 3245.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,242,471 + ECD_03094 0.41 -0.9
3,242,472 - ECD_03094 0.41 -0.5
3,242,561 + ECD_03094 0.48 -1.5
3,242,561 + ECD_03094 0.48 -0.3
3,242,580 - ECD_03094 0.49 +1.2
3,242,652 + ECD_03094 0.55 -0.7
3,242,653 - ECD_03094 0.55 -1.8
3,242,842 - ECD_03094 0.68 -2.1
3,242,844 + ECD_03094 0.69 -0.0
3,242,844 + ECD_03094 0.69 -0.2
3,242,847 + ECD_03094 0.69 +0.1
3,242,874 + ECD_03094 0.71 +0.1
3,242,967 - ECD_03094 0.78 +1.4
3,243,060 - ECD_03094 0.84 -0.2
3,243,060 - ECD_03094 0.84 +0.5
3,243,078 + ECD_03094 0.86 -0.0
3,243,078 + ECD_03094 0.86 +0.7
3,243,081 + ECD_03094 0.86 -0.6
3,243,082 - ECD_03094 0.86 -0.6
3,243,193 - -1.0
3,243,236 + +0.3
3,243,256 + -2.9
3,243,256 + +1.1
3,243,256 + +1.0
3,243,256 + +0.7
3,243,256 + +0.5
3,243,257 - -1.2
3,243,314 + +1.2
3,243,324 + +0.2
3,243,379 + -1.1
3,244,428 + -0.8
3,244,428 + -0.3
3,244,494 - +0.9
3,244,494 - +0.4
3,244,753 - ECD_03096 0.28 -2.8
3,245,082 + ECD_03096 0.63 -0.2
3,245,086 - ECD_03096 0.63 -0.4
3,245,334 - ECD_03096 0.90 -0.4
3,245,378 - -0.1
3,245,378 - -1.0

Or see this region's nucleotide sequence