Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02843 and ECD_02844 are separated by 354 nucleotides ECD_02844 and ECD_02845 are separated by 21 nucleotides ECD_02845 and ECD_02846 are separated by 4 nucleotides
ECD_02843: ECD_02843 - glycolate transporter, at 2,979,836 to 2,981,518
_02843
ECD_02844: ECD_02844 - malate synthase G, at 2,981,873 to 2,984,044
_02844
ECD_02845: ECD_02845 - DUF336 family protein, at 2,984,066 to 2,984,470
_02845
ECD_02846: ECD_02846 - glycolate oxidase 4Fe-4S iron-sulfur cluster subunit, at 2,984,475 to 2,985,698
_02846
Position (kb)
2981
2982
2983
2984
2985 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2980.923 kb on - strand, within ECD_02843 at 2981.055 kb on + strand, within ECD_02843 at 2981.056 kb on - strand, within ECD_02843 at 2981.216 kb on - strand, within ECD_02843 at 2981.289 kb on - strand, within ECD_02843 at 2981.299 kb on + strand, within ECD_02843 at 2981.300 kb on - strand, within ECD_02843 at 2981.373 kb on - strand at 2981.373 kb on - strand at 2981.373 kb on - strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.376 kb on - strand at 2981.376 kb on - strand at 2981.377 kb on + strand at 2981.414 kb on + strand at 2981.441 kb on + strand at 2981.496 kb on + strand at 2981.496 kb on + strand at 2981.497 kb on - strand at 2981.497 kb on - strand at 2981.624 kb on + strand at 2981.645 kb on - strand at 2981.655 kb on + strand at 2981.662 kb on + strand at 2981.663 kb on - strand at 2981.766 kb on + strand at 2981.767 kb on - strand at 2981.828 kb on - strand at 2981.895 kb on - strand at 2981.909 kb on + strand at 2981.926 kb on - strand at 2981.958 kb on - strand at 2982.136 kb on + strand, within ECD_02844 at 2982.137 kb on - strand, within ECD_02844 at 2982.229 kb on - strand, within ECD_02844 at 2982.290 kb on - strand, within ECD_02844 at 2982.377 kb on + strand, within ECD_02844 at 2982.378 kb on - strand, within ECD_02844 at 2982.378 kb on - strand, within ECD_02844 at 2982.386 kb on + strand, within ECD_02844 at 2982.387 kb on - strand, within ECD_02844 at 2982.387 kb on - strand, within ECD_02844 at 2982.387 kb on - strand, within ECD_02844 at 2982.489 kb on + strand, within ECD_02844 at 2982.489 kb on + strand, within ECD_02844 at 2982.489 kb on + strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844 at 2982.530 kb on - strand, within ECD_02844 at 2982.580 kb on + strand, within ECD_02844 at 2982.580 kb on + strand, within ECD_02844 at 2982.583 kb on + strand, within ECD_02844 at 2982.583 kb on + strand, within ECD_02844 at 2982.583 kb on + strand, within ECD_02844 at 2982.584 kb on - strand, within ECD_02844 at 2982.584 kb on - strand, within ECD_02844 at 2982.592 kb on - strand, within ECD_02844 at 2982.730 kb on + strand, within ECD_02844 at 2982.736 kb on + strand, within ECD_02844 at 2982.737 kb on - strand, within ECD_02844 at 2982.737 kb on - strand, within ECD_02844 at 2982.737 kb on - strand, within ECD_02844 at 2982.883 kb on + strand, within ECD_02844 at 2982.884 kb on - strand, within ECD_02844 at 2982.885 kb on + strand, within ECD_02844 at 2982.886 kb on - strand, within ECD_02844 at 2982.886 kb on - strand, within ECD_02844 at 2982.886 kb on - strand, within ECD_02844 at 2982.886 kb on - strand, within ECD_02844 at 2982.886 kb on - strand, within ECD_02844 at 2982.886 kb on - strand, within ECD_02844 at 2982.927 kb on + strand, within ECD_02844 at 2983.090 kb on - strand, within ECD_02844 at 2983.186 kb on - strand, within ECD_02844 at 2983.253 kb on - strand, within ECD_02844 at 2983.268 kb on - strand, within ECD_02844 at 2983.416 kb on - strand, within ECD_02844 at 2983.416 kb on - strand, within ECD_02844 at 2983.416 kb on - strand, within ECD_02844 at 2983.416 kb on - strand, within ECD_02844 at 2983.451 kb on + strand, within ECD_02844 at 2983.451 kb on + strand, within ECD_02844 at 2983.451 kb on + strand, within ECD_02844 at 2983.452 kb on - strand, within ECD_02844 at 2983.472 kb on - strand, within ECD_02844 at 2983.617 kb on + strand, within ECD_02844 at 2983.617 kb on + strand, within ECD_02844 at 2983.618 kb on - strand, within ECD_02844 at 2983.618 kb on - strand, within ECD_02844 at 2983.619 kb on + strand, within ECD_02844 at 2983.629 kb on + strand, within ECD_02844 at 2983.630 kb on - strand, within ECD_02844 at 2983.630 kb on - strand, within ECD_02844 at 2983.801 kb on + strand, within ECD_02844 at 2983.802 kb on - strand, within ECD_02844 at 2983.804 kb on - strand, within ECD_02844 at 2984.050 kb on - strand at 2984.050 kb on - strand at 2984.199 kb on - strand, within ECD_02845 at 2984.221 kb on + strand, within ECD_02845 at 2984.247 kb on + strand, within ECD_02845 at 2984.248 kb on - strand, within ECD_02845 at 2984.254 kb on + strand, within ECD_02845 at 2984.255 kb on - strand, within ECD_02845 at 2984.302 kb on + strand, within ECD_02845 at 2984.303 kb on - strand, within ECD_02845 at 2984.303 kb on - strand, within ECD_02845 at 2984.303 kb on - strand, within ECD_02845 at 2984.303 kb on - strand, within ECD_02845 at 2984.303 kb on - strand, within ECD_02845 at 2984.303 kb on - strand, within ECD_02845 at 2984.303 kb on - strand, within ECD_02845 at 2984.304 kb on + strand, within ECD_02845 at 2984.304 kb on + strand, within ECD_02845 at 2984.304 kb on + strand, within ECD_02845 at 2984.305 kb on - strand, within ECD_02845 at 2984.305 kb on - strand, within ECD_02845 at 2984.305 kb on - strand, within ECD_02845 at 2984.305 kb on - strand, within ECD_02845 at 2984.305 kb on - strand, within ECD_02845 at 2984.305 kb on - strand, within ECD_02845 at 2984.305 kb on - strand, within ECD_02845 at 2984.340 kb on - strand, within ECD_02845 at 2984.462 kb on - strand at 2984.659 kb on + strand, within ECD_02846 at 2984.659 kb on + strand, within ECD_02846 at 2984.659 kb on + strand, within ECD_02846 at 2984.660 kb on - strand, within ECD_02846 at 2984.660 kb on - strand, within ECD_02846 at 2984.660 kb on - strand, within ECD_02846 at 2984.711 kb on + strand, within ECD_02846 at 2984.769 kb on + strand, within ECD_02846 at 2984.770 kb on - strand, within ECD_02846 at 2984.897 kb on - strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.926 kb on + strand, within ECD_02846 at 2985.011 kb on + strand, within ECD_02846 at 2985.011 kb on + strand, within ECD_02846 at 2985.012 kb on - strand, within ECD_02846 at 2985.014 kb on + strand, within ECD_02846 at 2985.015 kb on - strand, within ECD_02846
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,980,923 - ECD_02843 0.65 -0.5 2,981,055 + ECD_02843 0.72 +0.1 2,981,056 - ECD_02843 0.72 -0.6 2,981,216 - ECD_02843 0.82 -0.7 2,981,289 - ECD_02843 0.86 +0.3 2,981,299 + ECD_02843 0.87 -1.2 2,981,300 - ECD_02843 0.87 -0.1 2,981,373 - -0.1 2,981,373 - +0.5 2,981,373 - +0.2 2,981,375 + +1.3 2,981,375 + +0.4 2,981,375 + -1.7 2,981,375 + -0.0 2,981,375 + +0.8 2,981,375 + -0.7 2,981,375 + +1.4 2,981,376 - -1.2 2,981,376 - -0.3 2,981,377 + +0.5 2,981,414 + -3.3 2,981,441 + +0.5 2,981,496 + -1.3 2,981,496 + -0.0 2,981,497 - +1.7 2,981,497 - +0.2 2,981,624 + +1.6 2,981,645 - -1.0 2,981,655 + +1.7 2,981,662 + -0.6 2,981,663 - +1.9 2,981,766 + +0.1 2,981,767 - +1.1 2,981,828 - -0.5 2,981,895 - -0.2 2,981,909 + -0.0 2,981,926 - -0.1 2,981,958 - -0.9 2,982,136 + ECD_02844 0.12 -0.5 2,982,137 - ECD_02844 0.12 -0.2 2,982,229 - ECD_02844 0.16 -1.1 2,982,290 - ECD_02844 0.19 -0.8 2,982,377 + ECD_02844 0.23 -0.9 2,982,378 - ECD_02844 0.23 -0.9 2,982,378 - ECD_02844 0.23 -1.7 2,982,386 + ECD_02844 0.24 -0.0 2,982,387 - ECD_02844 0.24 +1.1 2,982,387 - ECD_02844 0.24 -0.4 2,982,387 - ECD_02844 0.24 -1.2 2,982,489 + ECD_02844 0.28 +1.2 2,982,489 + ECD_02844 0.28 +0.2 2,982,489 + ECD_02844 0.28 -0.2 2,982,490 - ECD_02844 0.28 -0.0 2,982,490 - ECD_02844 0.28 -0.7 2,982,490 - ECD_02844 0.28 +1.1 2,982,490 - ECD_02844 0.28 +0.7 2,982,530 - ECD_02844 0.30 -1.8 2,982,580 + ECD_02844 0.33 +0.3 2,982,580 + ECD_02844 0.33 -0.8 2,982,583 + ECD_02844 0.33 +0.1 2,982,583 + ECD_02844 0.33 -0.3 2,982,583 + ECD_02844 0.33 -1.4 2,982,584 - ECD_02844 0.33 -0.7 2,982,584 - ECD_02844 0.33 -1.8 2,982,592 - ECD_02844 0.33 +0.0 2,982,730 + ECD_02844 0.39 +0.7 2,982,736 + ECD_02844 0.40 -0.2 2,982,737 - ECD_02844 0.40 -1.0 2,982,737 - ECD_02844 0.40 +0.2 2,982,737 - ECD_02844 0.40 -0.7 2,982,883 + ECD_02844 0.47 +0.2 2,982,884 - ECD_02844 0.47 +0.0 2,982,885 + ECD_02844 0.47 -2.8 2,982,886 - ECD_02844 0.47 +0.3 2,982,886 - ECD_02844 0.47 -0.3 2,982,886 - ECD_02844 0.47 +0.3 2,982,886 - ECD_02844 0.47 -0.8 2,982,886 - ECD_02844 0.47 +0.1 2,982,886 - ECD_02844 0.47 -1.2 2,982,927 + ECD_02844 0.49 -1.3 2,983,090 - ECD_02844 0.56 -0.4 2,983,186 - ECD_02844 0.60 +1.4 2,983,253 - ECD_02844 0.64 +1.0 2,983,268 - ECD_02844 0.64 -0.6 2,983,416 - ECD_02844 0.71 -0.4 2,983,416 - ECD_02844 0.71 +0.8 2,983,416 - ECD_02844 0.71 +1.8 2,983,416 - ECD_02844 0.71 -1.0 2,983,451 + ECD_02844 0.73 +0.6 2,983,451 + ECD_02844 0.73 -1.2 2,983,451 + ECD_02844 0.73 +0.3 2,983,452 - ECD_02844 0.73 +0.1 2,983,472 - ECD_02844 0.74 -0.2 2,983,617 + ECD_02844 0.80 +0.3 2,983,617 + ECD_02844 0.80 +1.5 2,983,618 - ECD_02844 0.80 +0.1 2,983,618 - ECD_02844 0.80 -0.8 2,983,619 + ECD_02844 0.80 +1.1 2,983,629 + ECD_02844 0.81 -0.0 2,983,630 - ECD_02844 0.81 +0.0 2,983,630 - ECD_02844 0.81 +0.7 2,983,801 + ECD_02844 0.89 -1.1 2,983,802 - ECD_02844 0.89 -0.4 2,983,804 - ECD_02844 0.89 -4.6 2,984,050 - -1.2 2,984,050 - +0.6 2,984,199 - ECD_02845 0.33 +0.0 2,984,221 + ECD_02845 0.38 -0.1 2,984,247 + ECD_02845 0.45 +0.4 2,984,248 - ECD_02845 0.45 -1.7 2,984,254 + ECD_02845 0.46 +0.6 2,984,255 - ECD_02845 0.47 -2.1 2,984,302 + ECD_02845 0.58 +0.0 2,984,303 - ECD_02845 0.59 -0.1 2,984,303 - ECD_02845 0.59 +0.7 2,984,303 - ECD_02845 0.59 +1.2 2,984,303 - ECD_02845 0.59 -1.0 2,984,303 - ECD_02845 0.59 +0.5 2,984,303 - ECD_02845 0.59 +1.6 2,984,303 - ECD_02845 0.59 +1.3 2,984,304 + ECD_02845 0.59 -1.8 2,984,304 + ECD_02845 0.59 -0.7 2,984,304 + ECD_02845 0.59 +1.9 2,984,305 - ECD_02845 0.59 -0.5 2,984,305 - ECD_02845 0.59 -0.7 2,984,305 - ECD_02845 0.59 +1.0 2,984,305 - ECD_02845 0.59 -0.6 2,984,305 - ECD_02845 0.59 -0.6 2,984,305 - ECD_02845 0.59 +0.9 2,984,305 - ECD_02845 0.59 -0.6 2,984,340 - ECD_02845 0.68 +0.6 2,984,462 - -0.5 2,984,659 + ECD_02846 0.15 -0.5 2,984,659 + ECD_02846 0.15 +1.7 2,984,659 + ECD_02846 0.15 -1.5 2,984,660 - ECD_02846 0.15 -0.3 2,984,660 - ECD_02846 0.15 +1.8 2,984,660 - ECD_02846 0.15 +0.1 2,984,711 + ECD_02846 0.19 +0.5 2,984,769 + ECD_02846 0.24 -1.1 2,984,770 - ECD_02846 0.24 +1.2 2,984,897 - ECD_02846 0.34 -0.2 2,984,898 + ECD_02846 0.35 -0.4 2,984,898 + ECD_02846 0.35 +0.0 2,984,898 + ECD_02846 0.35 -1.0 2,984,898 + ECD_02846 0.35 +2.3 2,984,898 + ECD_02846 0.35 +1.3 2,984,898 + ECD_02846 0.35 -0.9 2,984,899 - ECD_02846 0.35 -0.5 2,984,899 - ECD_02846 0.35 -1.7 2,984,899 - ECD_02846 0.35 -0.7 2,984,899 - ECD_02846 0.35 +0.6 2,984,899 - ECD_02846 0.35 -1.0 2,984,926 + ECD_02846 0.37 -0.3 2,985,011 + ECD_02846 0.44 +1.5 2,985,011 + ECD_02846 0.44 +0.1 2,985,012 - ECD_02846 0.44 -0.3 2,985,014 + ECD_02846 0.44 -0.8 2,985,015 - ECD_02846 0.44 +1.0
Or see this region's nucleotide sequence