Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02695 and ECD_02696 are separated by 56 nucleotides ECD_02696 and ECD_02697 are separated by 13 nucleotides ECD_02697 and ECD_t00054 are separated by 237 nucleotides ECD_t00054 and ECD_02698 are separated by 78 nucleotides
ECD_02695: ECD_02695 - putative transposase-related protein, at 2,827,872 to 2,828,180
_02695
ECD_02696: ECD_02696 - putative transposase for IS3, at 2,828,237 to 2,829,043
_02696
ECD_02697: ECD_02697 - hypothetical protein, at 2,829,057 to 2,829,608
_02697
ECD_t00054: ECD_t00054 - tRNA-Gly, at 2,829,846 to 2,829,919
_t00054
ECD_02698: ECD_02698 - LysM domain-containing M23 family putative peptidase; septation lipoprotein, at 2,829,998 to 2,830,753
_02698
Position (kb)
2829
2830 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2829.058 kb on + strand at 2829.058 kb on + strand at 2829.143 kb on + strand, within ECD_02697 at 2829.143 kb on + strand, within ECD_02697 at 2829.143 kb on + strand, within ECD_02697 at 2829.144 kb on - strand, within ECD_02697 at 2829.144 kb on - strand, within ECD_02697 at 2829.144 kb on - strand, within ECD_02697 at 2829.144 kb on - strand, within ECD_02697 at 2829.144 kb on - strand, within ECD_02697 at 2829.144 kb on - strand, within ECD_02697 at 2829.145 kb on + strand, within ECD_02697 at 2829.201 kb on + strand, within ECD_02697 at 2829.205 kb on - strand, within ECD_02697 at 2829.205 kb on - strand, within ECD_02697 at 2829.214 kb on + strand, within ECD_02697 at 2829.214 kb on + strand, within ECD_02697 at 2829.214 kb on + strand, within ECD_02697 at 2829.215 kb on - strand, within ECD_02697 at 2829.215 kb on - strand, within ECD_02697 at 2829.228 kb on - strand, within ECD_02697 at 2829.384 kb on - strand, within ECD_02697 at 2829.386 kb on - strand, within ECD_02697 at 2829.568 kb on - strand at 2829.589 kb on - strand at 2829.656 kb on + strand at 2829.876 kb on - strand, within ECD_t00054 at 2829.876 kb on - strand, within ECD_t00054 at 2829.878 kb on - strand, within ECD_t00054 at 2829.878 kb on - strand, within ECD_t00054 at 2829.878 kb on - strand, within ECD_t00054 at 2829.901 kb on - strand, within ECD_t00054 at 2829.901 kb on - strand, within ECD_t00054 at 2829.912 kb on - strand at 2829.912 kb on - strand at 2829.912 kb on - strand at 2829.948 kb on + strand at 2829.948 kb on + strand at 2830.032 kb on + strand at 2830.032 kb on + strand at 2830.032 kb on + strand at 2830.032 kb on + strand at 2830.032 kb on + strand at 2830.033 kb on - strand at 2830.151 kb on - strand, within ECD_02698 at 2830.151 kb on - strand, within ECD_02698 at 2830.154 kb on + strand, within ECD_02698 at 2830.180 kb on - strand, within ECD_02698 at 2830.180 kb on - strand, within ECD_02698 at 2830.186 kb on + strand, within ECD_02698 at 2830.187 kb on - strand, within ECD_02698 at 2830.191 kb on + strand, within ECD_02698 at 2830.191 kb on + strand, within ECD_02698 at 2830.191 kb on + strand, within ECD_02698 at 2830.192 kb on - strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.251 kb on + strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.252 kb on - strand, within ECD_02698 at 2830.278 kb on + strand, within ECD_02698 at 2830.278 kb on + strand, within ECD_02698 at 2830.282 kb on + strand, within ECD_02698 at 2830.282 kb on + strand, within ECD_02698 at 2830.282 kb on + strand, within ECD_02698 at 2830.283 kb on - strand, within ECD_02698 at 2830.283 kb on - strand, within ECD_02698 at 2830.289 kb on - strand, within ECD_02698 at 2830.352 kb on - strand, within ECD_02698 at 2830.352 kb on - strand, within ECD_02698 at 2830.352 kb on - strand, within ECD_02698 at 2830.392 kb on - strand, within ECD_02698 at 2830.478 kb on - strand, within ECD_02698 at 2830.478 kb on - strand, within ECD_02698 at 2830.478 kb on - strand, within ECD_02698 at 2830.478 kb on - strand, within ECD_02698 at 2830.478 kb on - strand, within ECD_02698 at 2830.478 kb on - strand, within ECD_02698 at 2830.480 kb on + strand, within ECD_02698 at 2830.480 kb on + strand, within ECD_02698 at 2830.487 kb on - strand, within ECD_02698 at 2830.487 kb on - strand, within ECD_02698 at 2830.533 kb on + strand, within ECD_02698 at 2830.533 kb on + strand, within ECD_02698 at 2830.533 kb on + strand, within ECD_02698 at 2830.534 kb on - strand, within ECD_02698 at 2830.534 kb on - strand, within ECD_02698 at 2830.571 kb on + strand, within ECD_02698 at 2830.597 kb on + strand, within ECD_02698 at 2830.598 kb on - strand, within ECD_02698 at 2830.602 kb on + strand, within ECD_02698 at 2830.604 kb on + strand, within ECD_02698 at 2830.604 kb on + strand, within ECD_02698 at 2830.605 kb on - strand, within ECD_02698
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,829,058 + -1.4 2,829,058 + -1.2 2,829,143 + ECD_02697 0.16 -0.6 2,829,143 + ECD_02697 0.16 +1.7 2,829,143 + ECD_02697 0.16 +0.1 2,829,144 - ECD_02697 0.16 -0.2 2,829,144 - ECD_02697 0.16 +0.7 2,829,144 - ECD_02697 0.16 -0.3 2,829,144 - ECD_02697 0.16 -0.2 2,829,144 - ECD_02697 0.16 +1.5 2,829,144 - ECD_02697 0.16 +0.0 2,829,145 + ECD_02697 0.16 +1.3 2,829,201 + ECD_02697 0.26 +0.3 2,829,205 - ECD_02697 0.27 +0.2 2,829,205 - ECD_02697 0.27 +0.7 2,829,214 + ECD_02697 0.28 -0.4 2,829,214 + ECD_02697 0.28 +0.6 2,829,214 + ECD_02697 0.28 +1.1 2,829,215 - ECD_02697 0.29 -0.1 2,829,215 - ECD_02697 0.29 -1.1 2,829,228 - ECD_02697 0.31 +1.7 2,829,384 - ECD_02697 0.59 -0.7 2,829,386 - ECD_02697 0.60 +0.5 2,829,568 - +0.9 2,829,589 - +1.8 2,829,656 + -1.7 2,829,876 - ECD_t00054 0.41 -0.0 2,829,876 - ECD_t00054 0.41 -0.1 2,829,878 - ECD_t00054 0.43 +0.2 2,829,878 - ECD_t00054 0.43 -1.6 2,829,878 - ECD_t00054 0.43 -2.3 2,829,901 - ECD_t00054 0.74 +0.4 2,829,901 - ECD_t00054 0.74 -0.4 2,829,912 - +0.4 2,829,912 - +0.2 2,829,912 - -2.6 2,829,948 + -0.3 2,829,948 + -0.3 2,830,032 + -0.6 2,830,032 + +0.2 2,830,032 + -0.0 2,830,032 + +2.4 2,830,032 + -1.2 2,830,033 - -0.0 2,830,151 - ECD_02698 0.20 +0.3 2,830,151 - ECD_02698 0.20 -1.5 2,830,154 + ECD_02698 0.21 -0.2 2,830,180 - ECD_02698 0.24 +0.5 2,830,180 - ECD_02698 0.24 -1.8 2,830,186 + ECD_02698 0.25 -0.2 2,830,187 - ECD_02698 0.25 -2.2 2,830,191 + ECD_02698 0.26 +0.7 2,830,191 + ECD_02698 0.26 +0.1 2,830,191 + ECD_02698 0.26 -0.8 2,830,192 - ECD_02698 0.26 -0.5 2,830,251 + ECD_02698 0.33 +2.0 2,830,251 + ECD_02698 0.33 -1.0 2,830,251 + ECD_02698 0.33 +2.4 2,830,251 + ECD_02698 0.33 +0.2 2,830,251 + ECD_02698 0.33 -1.6 2,830,251 + ECD_02698 0.33 -1.2 2,830,251 + ECD_02698 0.33 -0.1 2,830,251 + ECD_02698 0.33 +0.8 2,830,251 + ECD_02698 0.33 +0.4 2,830,251 + ECD_02698 0.33 +0.9 2,830,251 + ECD_02698 0.33 +0.0 2,830,251 + ECD_02698 0.33 +0.9 2,830,251 + ECD_02698 0.33 -0.2 2,830,251 + ECD_02698 0.33 -1.6 2,830,252 - ECD_02698 0.34 -0.3 2,830,252 - ECD_02698 0.34 +0.2 2,830,252 - ECD_02698 0.34 +1.2 2,830,252 - ECD_02698 0.34 +1.8 2,830,252 - ECD_02698 0.34 -0.1 2,830,252 - ECD_02698 0.34 +1.0 2,830,252 - ECD_02698 0.34 -1.1 2,830,252 - ECD_02698 0.34 -0.9 2,830,278 + ECD_02698 0.37 -0.5 2,830,278 + ECD_02698 0.37 +0.7 2,830,282 + ECD_02698 0.38 -2.2 2,830,282 + ECD_02698 0.38 +0.4 2,830,282 + ECD_02698 0.38 +0.7 2,830,283 - ECD_02698 0.38 +1.5 2,830,283 - ECD_02698 0.38 +0.2 2,830,289 - ECD_02698 0.38 -0.3 2,830,352 - ECD_02698 0.47 +2.0 2,830,352 - ECD_02698 0.47 +0.9 2,830,352 - ECD_02698 0.47 +1.4 2,830,392 - ECD_02698 0.52 +1.1 2,830,478 - ECD_02698 0.63 -1.6 2,830,478 - ECD_02698 0.63 -0.2 2,830,478 - ECD_02698 0.63 -0.1 2,830,478 - ECD_02698 0.63 +1.4 2,830,478 - ECD_02698 0.63 +1.9 2,830,478 - ECD_02698 0.63 +1.0 2,830,480 + ECD_02698 0.64 +1.5 2,830,480 + ECD_02698 0.64 +1.4 2,830,487 - ECD_02698 0.65 +2.4 2,830,487 - ECD_02698 0.65 +1.8 2,830,533 + ECD_02698 0.71 +0.5 2,830,533 + ECD_02698 0.71 -0.0 2,830,533 + ECD_02698 0.71 -0.3 2,830,534 - ECD_02698 0.71 -0.8 2,830,534 - ECD_02698 0.71 -0.2 2,830,571 + ECD_02698 0.76 +0.6 2,830,597 + ECD_02698 0.79 -1.0 2,830,598 - ECD_02698 0.79 -0.2 2,830,602 + ECD_02698 0.80 -0.9 2,830,604 + ECD_02698 0.80 -1.1 2,830,604 + ECD_02698 0.80 -1.9 2,830,605 - ECD_02698 0.80 +0.9
Or see this region's nucleotide sequence