Strain Fitness in Escherichia coli BL21 around ECD_02635

Experiment: EV116

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02634 and ECD_02635 are separated by 434 nucleotidesECD_02635 and ECD_02636 are separated by 17 nucleotidesECD_02636 and ECD_02637 overlap by 1 nucleotides ECD_02634: ECD_02634 - putative D-glucarate transporter, at 2,753,338 to 2,754,690 _02634 ECD_02635: ECD_02635 - short-chain flavodoxin, FMN-binding, at 2,755,125 to 2,755,574 _02635 ECD_02636: ECD_02636 - tRNA(Ile1,Asp) pseudouridine(65) synthase, at 2,755,592 to 2,756,374 _02636 ECD_02637: ECD_02637 - DUF446 family protein, at 2,756,374 to 2,756,703 _02637 Position (kb) 2755 2756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2754.336 kb on + strand, within ECD_02634at 2754.373 kb on - strand, within ECD_02634at 2754.373 kb on - strand, within ECD_02634at 2754.397 kb on - strand, within ECD_02634at 2754.411 kb on + strand, within ECD_02634at 2754.411 kb on + strand, within ECD_02634at 2754.411 kb on + strand, within ECD_02634at 2754.488 kb on + strand, within ECD_02634at 2754.488 kb on + strand, within ECD_02634at 2754.488 kb on + strand, within ECD_02634at 2754.488 kb on + strand, within ECD_02634at 2754.488 kb on + strand, within ECD_02634at 2754.488 kb on + strand, within ECD_02634at 2754.488 kb on + strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.489 kb on - strand, within ECD_02634at 2754.515 kb on + strand, within ECD_02634at 2754.515 kb on + strand, within ECD_02634at 2754.515 kb on + strand, within ECD_02634at 2754.515 kb on + strand, within ECD_02634at 2754.516 kb on - strand, within ECD_02634at 2754.516 kb on - strand, within ECD_02634at 2754.593 kb on + strandat 2754.593 kb on + strandat 2754.594 kb on - strandat 2754.594 kb on - strandat 2754.629 kb on - strandat 2754.679 kb on + strandat 2754.679 kb on + strandat 2754.679 kb on + strandat 2754.679 kb on + strandat 2754.679 kb on + strandat 2754.680 kb on - strandat 2754.680 kb on - strandat 2754.765 kb on + strandat 2754.766 kb on - strandat 2754.766 kb on - strandat 2754.786 kb on + strandat 2754.817 kb on + strandat 2754.818 kb on - strandat 2754.818 kb on - strandat 2754.818 kb on - strandat 2754.818 kb on - strandat 2754.819 kb on + strandat 2754.820 kb on - strandat 2754.820 kb on - strandat 2754.820 kb on - strandat 2754.829 kb on + strandat 2754.829 kb on + strandat 2754.829 kb on + strandat 2754.835 kb on + strandat 2754.836 kb on - strandat 2754.837 kb on + strandat 2754.837 kb on + strandat 2754.837 kb on + strandat 2754.838 kb on - strandat 2754.880 kb on + strandat 2754.881 kb on - strandat 2754.881 kb on - strandat 2755.043 kb on + strandat 2755.044 kb on - strandat 2755.108 kb on - strandat 2755.108 kb on - strandat 2755.123 kb on + strandat 2755.285 kb on + strand, within ECD_02635at 2755.285 kb on + strand, within ECD_02635at 2755.285 kb on + strand, within ECD_02635at 2755.286 kb on - strand, within ECD_02635at 2755.286 kb on - strand, within ECD_02635at 2755.286 kb on - strand, within ECD_02635at 2755.286 kb on - strand, within ECD_02635at 2755.286 kb on - strand, within ECD_02635at 2755.289 kb on + strand, within ECD_02635at 2755.289 kb on + strand, within ECD_02635at 2755.290 kb on - strand, within ECD_02635at 2755.290 kb on - strand, within ECD_02635at 2755.290 kb on - strand, within ECD_02635at 2755.290 kb on - strand, within ECD_02635at 2755.290 kb on - strand, within ECD_02635at 2755.290 kb on - strand, within ECD_02635at 2755.291 kb on - strand, within ECD_02635at 2755.343 kb on + strand, within ECD_02635at 2755.343 kb on + strand, within ECD_02635at 2755.344 kb on - strand, within ECD_02635at 2755.344 kb on - strand, within ECD_02635at 2755.344 kb on - strand, within ECD_02635at 2755.344 kb on - strand, within ECD_02635at 2755.344 kb on - strand, within ECD_02635at 2755.376 kb on + strand, within ECD_02635at 2755.410 kb on - strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.423 kb on + strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.424 kb on - strand, within ECD_02635at 2755.453 kb on - strand, within ECD_02635at 2755.470 kb on + strand, within ECD_02635at 2755.470 kb on + strand, within ECD_02635at 2755.471 kb on - strand, within ECD_02635at 2755.471 kb on - strand, within ECD_02635at 2755.471 kb on - strand, within ECD_02635at 2755.524 kb on + strand, within ECD_02635at 2755.524 kb on + strand, within ECD_02635at 2755.541 kb on - strandat 2755.594 kb on - strandat 2755.601 kb on + strandat 2755.601 kb on + strandat 2755.601 kb on + strandat 2755.601 kb on + strandat 2755.602 kb on - strandat 2755.602 kb on - strandat 2755.602 kb on - strandat 2755.602 kb on - strandat 2755.602 kb on - strandat 2755.602 kb on - strandat 2755.602 kb on - strandat 2755.602 kb on - strandat 2755.720 kb on + strand, within ECD_02636at 2755.738 kb on + strand, within ECD_02636at 2755.739 kb on - strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.772 kb on + strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.773 kb on - strand, within ECD_02636at 2755.850 kb on - strand, within ECD_02636at 2756.017 kb on + strand, within ECD_02636at 2756.018 kb on - strand, within ECD_02636at 2756.035 kb on + strand, within ECD_02636at 2756.231 kb on - strand, within ECD_02636at 2756.246 kb on + strand, within ECD_02636at 2756.330 kb on - strandat 2756.330 kb on - strandat 2756.358 kb on + strandat 2756.359 kb on - strandat 2756.359 kb on - strandat 2756.359 kb on - strandat 2756.363 kb on + strandat 2756.363 kb on + strandat 2756.363 kb on + strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.427 kb on + strand, within ECD_02637at 2756.427 kb on + strand, within ECD_02637at 2756.427 kb on + strand, within ECD_02637at 2756.468 kb on + strand, within ECD_02637at 2756.468 kb on + strand, within ECD_02637at 2756.469 kb on - strand, within ECD_02637at 2756.471 kb on + strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.511 kb on + strand, within ECD_02637at 2756.515 kb on + strand, within ECD_02637

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV116
remove
2,754,336 + ECD_02634 0.74 -0.2
2,754,373 - ECD_02634 0.76 +0.7
2,754,373 - ECD_02634 0.76 -1.5
2,754,397 - ECD_02634 0.78 -1.2
2,754,411 + ECD_02634 0.79 +0.8
2,754,411 + ECD_02634 0.79 -2.0
2,754,411 + ECD_02634 0.79 -0.5
2,754,488 + ECD_02634 0.85 -0.5
2,754,488 + ECD_02634 0.85 -1.9
2,754,488 + ECD_02634 0.85 -0.1
2,754,488 + ECD_02634 0.85 -1.4
2,754,488 + ECD_02634 0.85 -0.1
2,754,488 + ECD_02634 0.85 -0.4
2,754,488 + ECD_02634 0.85 +0.4
2,754,489 - ECD_02634 0.85 -1.4
2,754,489 - ECD_02634 0.85 -2.3
2,754,489 - ECD_02634 0.85 -0.8
2,754,489 - ECD_02634 0.85 -1.3
2,754,489 - ECD_02634 0.85 -0.7
2,754,489 - ECD_02634 0.85 -1.0
2,754,489 - ECD_02634 0.85 -0.5
2,754,489 - ECD_02634 0.85 +1.7
2,754,489 - ECD_02634 0.85 -1.2
2,754,489 - ECD_02634 0.85 -1.9
2,754,489 - ECD_02634 0.85 -1.7
2,754,489 - ECD_02634 0.85 -0.4
2,754,515 + ECD_02634 0.87 +0.1
2,754,515 + ECD_02634 0.87 +1.5
2,754,515 + ECD_02634 0.87 +1.5
2,754,515 + ECD_02634 0.87 +0.1
2,754,516 - ECD_02634 0.87 -2.0
2,754,516 - ECD_02634 0.87 +2.7
2,754,593 + +0.9
2,754,593 + -0.2
2,754,594 - +0.4
2,754,594 - +0.0
2,754,629 - -1.0
2,754,679 + -1.5
2,754,679 + +0.7
2,754,679 + -2.6
2,754,679 + +0.1
2,754,679 + -0.8
2,754,680 - +0.5
2,754,680 - +0.2
2,754,765 + -0.4
2,754,766 - -2.1
2,754,766 - -0.1
2,754,786 + -0.2
2,754,817 + -0.1
2,754,818 - +0.0
2,754,818 - -0.4
2,754,818 - -1.0
2,754,818 - -1.9
2,754,819 + +0.9
2,754,820 - -0.3
2,754,820 - +0.2
2,754,820 - -0.2
2,754,829 + -1.5
2,754,829 + +0.6
2,754,829 + +0.5
2,754,835 + +1.0
2,754,836 - -0.7
2,754,837 + +1.2
2,754,837 + +0.3
2,754,837 + +0.0
2,754,838 - +1.8
2,754,880 + -1.2
2,754,881 - +0.7
2,754,881 - +1.7
2,755,043 + +0.4
2,755,044 - +0.8
2,755,108 - +1.2
2,755,108 - -1.9
2,755,123 + +0.3
2,755,285 + ECD_02635 0.36 +0.0
2,755,285 + ECD_02635 0.36 -0.1
2,755,285 + ECD_02635 0.36 +1.6
2,755,286 - ECD_02635 0.36 -0.4
2,755,286 - ECD_02635 0.36 +0.7
2,755,286 - ECD_02635 0.36 +0.9
2,755,286 - ECD_02635 0.36 -0.9
2,755,286 - ECD_02635 0.36 -0.9
2,755,289 + ECD_02635 0.36 -1.8
2,755,289 + ECD_02635 0.36 +0.5
2,755,290 - ECD_02635 0.37 -0.3
2,755,290 - ECD_02635 0.37 -0.8
2,755,290 - ECD_02635 0.37 -0.8
2,755,290 - ECD_02635 0.37 -0.7
2,755,290 - ECD_02635 0.37 -1.0
2,755,290 - ECD_02635 0.37 -0.8
2,755,291 - ECD_02635 0.37 -0.5
2,755,343 + ECD_02635 0.48 +0.0
2,755,343 + ECD_02635 0.48 -0.8
2,755,344 - ECD_02635 0.49 +1.0
2,755,344 - ECD_02635 0.49 -0.4
2,755,344 - ECD_02635 0.49 -0.4
2,755,344 - ECD_02635 0.49 -0.3
2,755,344 - ECD_02635 0.49 -1.2
2,755,376 + ECD_02635 0.56 +1.0
2,755,410 - ECD_02635 0.63 -0.6
2,755,423 + ECD_02635 0.66 +0.6
2,755,423 + ECD_02635 0.66 +0.2
2,755,423 + ECD_02635 0.66 -0.1
2,755,423 + ECD_02635 0.66 +0.4
2,755,423 + ECD_02635 0.66 -0.0
2,755,423 + ECD_02635 0.66 -2.4
2,755,423 + ECD_02635 0.66 +0.0
2,755,423 + ECD_02635 0.66 +0.0
2,755,424 - ECD_02635 0.66 -0.9
2,755,424 - ECD_02635 0.66 +0.4
2,755,424 - ECD_02635 0.66 -0.9
2,755,424 - ECD_02635 0.66 +0.5
2,755,424 - ECD_02635 0.66 -0.2
2,755,424 - ECD_02635 0.66 -0.0
2,755,424 - ECD_02635 0.66 -0.8
2,755,424 - ECD_02635 0.66 +0.7
2,755,424 - ECD_02635 0.66 +0.6
2,755,424 - ECD_02635 0.66 +1.2
2,755,424 - ECD_02635 0.66 +2.1
2,755,424 - ECD_02635 0.66 -0.7
2,755,424 - ECD_02635 0.66 -0.3
2,755,453 - ECD_02635 0.73 -0.3
2,755,470 + ECD_02635 0.77 +0.2
2,755,470 + ECD_02635 0.77 -0.9
2,755,471 - ECD_02635 0.77 -1.7
2,755,471 - ECD_02635 0.77 -0.6
2,755,471 - ECD_02635 0.77 -0.5
2,755,524 + ECD_02635 0.89 -1.1
2,755,524 + ECD_02635 0.89 -0.5
2,755,541 - +0.8
2,755,594 - -0.1
2,755,601 + -1.8
2,755,601 + -0.0
2,755,601 + -0.8
2,755,601 + +0.2
2,755,602 - +0.1
2,755,602 - +0.2
2,755,602 - +0.9
2,755,602 - +0.8
2,755,602 - -0.5
2,755,602 - -0.0
2,755,602 - -1.9
2,755,602 - +1.5
2,755,720 + ECD_02636 0.16 -1.5
2,755,738 + ECD_02636 0.19 +1.7
2,755,739 - ECD_02636 0.19 -0.5
2,755,772 + ECD_02636 0.23 +2.1
2,755,772 + ECD_02636 0.23 +0.1
2,755,772 + ECD_02636 0.23 -1.7
2,755,772 + ECD_02636 0.23 -1.2
2,755,772 + ECD_02636 0.23 +0.3
2,755,772 + ECD_02636 0.23 -1.8
2,755,772 + ECD_02636 0.23 +0.7
2,755,772 + ECD_02636 0.23 -2.9
2,755,772 + ECD_02636 0.23 -0.1
2,755,772 + ECD_02636 0.23 -1.7
2,755,772 + ECD_02636 0.23 -1.6
2,755,772 + ECD_02636 0.23 -0.7
2,755,773 - ECD_02636 0.23 -0.3
2,755,773 - ECD_02636 0.23 -1.2
2,755,773 - ECD_02636 0.23 -0.6
2,755,773 - ECD_02636 0.23 -0.3
2,755,773 - ECD_02636 0.23 -0.7
2,755,773 - ECD_02636 0.23 -0.9
2,755,773 - ECD_02636 0.23 +0.4
2,755,773 - ECD_02636 0.23 +1.2
2,755,773 - ECD_02636 0.23 -1.9
2,755,773 - ECD_02636 0.23 -0.9
2,755,773 - ECD_02636 0.23 +0.9
2,755,773 - ECD_02636 0.23 -0.1
2,755,773 - ECD_02636 0.23 -1.9
2,755,773 - ECD_02636 0.23 +0.9
2,755,850 - ECD_02636 0.33 -0.8
2,756,017 + ECD_02636 0.54 -1.7
2,756,018 - ECD_02636 0.54 -0.1
2,756,035 + ECD_02636 0.57 +0.7
2,756,231 - ECD_02636 0.82 -1.0
2,756,246 + ECD_02636 0.84 +0.0
2,756,330 - -0.6
2,756,330 - +0.0
2,756,358 + +1.4
2,756,359 - -2.1
2,756,359 - +0.6
2,756,359 - +0.3
2,756,363 + +0.4
2,756,363 + +0.6
2,756,363 + -1.3
2,756,364 - -0.8
2,756,364 - +0.5
2,756,364 - +0.6
2,756,364 - +1.6
2,756,364 - -1.3
2,756,375 + +0.5
2,756,375 + -1.9
2,756,375 + -0.3
2,756,375 + -1.5
2,756,375 + -0.1
2,756,427 + ECD_02637 0.16 -0.1
2,756,427 + ECD_02637 0.16 +0.7
2,756,427 + ECD_02637 0.16 -0.3
2,756,468 + ECD_02637 0.28 +0.5
2,756,468 + ECD_02637 0.28 +0.3
2,756,469 - ECD_02637 0.29 +0.7
2,756,471 + ECD_02637 0.29 -0.1
2,756,472 - ECD_02637 0.30 +0.8
2,756,472 - ECD_02637 0.30 +0.8
2,756,472 - ECD_02637 0.30 +0.1
2,756,472 - ECD_02637 0.30 +0.2
2,756,472 - ECD_02637 0.30 -0.2
2,756,511 + ECD_02637 0.42 -0.5
2,756,515 + ECD_02637 0.43 +0.1

Or see this region's nucleotide sequence