Strain Fitness in Escherichia coli BL21 around ECD_02533

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02532 and ECD_02533 are separated by 353 nucleotidesECD_02533 and ECD_02534 overlap by 8 nucleotides ECD_02532: ECD_02532 - ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein, at 2,643,361 to 2,644,320 _02532 ECD_02533: ECD_02533 - glycine betaine/proline ABC transporter periplasmic binding protein, at 2,644,674 to 2,645,876 _02533 ECD_02534: ECD_02534 - glycine betaine/proline ABC transporter permease, at 2,645,869 to 2,646,933 _02534 Position (kb) 2644 2645 2646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2643.674 kb on - strand, within ECD_02532at 2643.674 kb on - strand, within ECD_02532at 2643.695 kb on + strand, within ECD_02532at 2643.696 kb on - strand, within ECD_02532at 2643.785 kb on - strand, within ECD_02532at 2643.871 kb on + strand, within ECD_02532at 2643.949 kb on + strand, within ECD_02532at 2643.953 kb on - strand, within ECD_02532at 2643.956 kb on + strand, within ECD_02532at 2643.956 kb on + strand, within ECD_02532at 2643.956 kb on + strand, within ECD_02532at 2643.957 kb on - strand, within ECD_02532at 2643.957 kb on - strand, within ECD_02532at 2643.957 kb on - strand, within ECD_02532at 2643.963 kb on + strand, within ECD_02532at 2643.964 kb on - strand, within ECD_02532at 2643.964 kb on - strand, within ECD_02532at 2644.048 kb on + strand, within ECD_02532at 2644.066 kb on + strand, within ECD_02532at 2644.066 kb on + strand, within ECD_02532at 2644.067 kb on - strand, within ECD_02532at 2644.067 kb on - strand, within ECD_02532at 2644.067 kb on - strand, within ECD_02532at 2644.137 kb on + strand, within ECD_02532at 2644.137 kb on + strand, within ECD_02532at 2644.270 kb on + strandat 2644.270 kb on + strandat 2644.271 kb on - strandat 2644.271 kb on - strandat 2644.271 kb on - strandat 2644.516 kb on - strandat 2644.636 kb on + strandat 2644.871 kb on + strand, within ECD_02533at 2644.885 kb on + strand, within ECD_02533at 2645.023 kb on + strand, within ECD_02533at 2645.034 kb on - strand, within ECD_02533at 2645.081 kb on + strand, within ECD_02533at 2645.216 kb on + strand, within ECD_02533at 2645.227 kb on + strand, within ECD_02533at 2645.227 kb on + strand, within ECD_02533at 2645.227 kb on + strand, within ECD_02533at 2645.227 kb on + strand, within ECD_02533at 2645.230 kb on + strand, within ECD_02533at 2645.230 kb on + strand, within ECD_02533at 2645.230 kb on + strand, within ECD_02533at 2645.233 kb on + strand, within ECD_02533at 2645.266 kb on + strand, within ECD_02533at 2645.333 kb on + strand, within ECD_02533at 2645.451 kb on + strand, within ECD_02533at 2645.451 kb on + strand, within ECD_02533at 2645.452 kb on - strand, within ECD_02533at 2645.459 kb on + strand, within ECD_02533at 2645.460 kb on - strand, within ECD_02533at 2645.480 kb on + strand, within ECD_02533at 2645.483 kb on + strand, within ECD_02533at 2645.507 kb on + strand, within ECD_02533at 2645.534 kb on - strand, within ECD_02533at 2645.601 kb on + strand, within ECD_02533at 2645.601 kb on + strand, within ECD_02533at 2645.601 kb on + strand, within ECD_02533at 2645.607 kb on + strand, within ECD_02533at 2645.607 kb on + strand, within ECD_02533at 2645.608 kb on - strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.627 kb on + strand, within ECD_02533at 2645.628 kb on - strand, within ECD_02533at 2645.628 kb on - strand, within ECD_02533at 2645.628 kb on - strand, within ECD_02533at 2645.628 kb on - strand, within ECD_02533at 2645.741 kb on + strand, within ECD_02533at 2645.741 kb on + strand, within ECD_02533at 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.808 kb on + strandat 2645.809 kb on - strandat 2645.809 kb on - strandat 2645.809 kb on - strandat 2645.809 kb on - strandat 2645.809 kb on - strandat 2645.809 kb on - strandat 2645.809 kb on - strandat 2645.848 kb on + strandat 2645.848 kb on + strandat 2645.848 kb on + strandat 2645.848 kb on + strandat 2645.849 kb on - strandat 2645.849 kb on - strandat 2645.849 kb on - strandat 2645.849 kb on - strandat 2645.867 kb on + strandat 2645.867 kb on + strandat 2645.868 kb on - strandat 2645.943 kb on + strandat 2645.943 kb on + strandat 2645.995 kb on - strand, within ECD_02534at 2646.022 kb on - strand, within ECD_02534at 2646.042 kb on + strand, within ECD_02534at 2646.043 kb on - strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.142 kb on + strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.143 kb on - strand, within ECD_02534at 2646.144 kb on + strand, within ECD_02534at 2646.144 kb on + strand, within ECD_02534at 2646.144 kb on + strand, within ECD_02534at 2646.145 kb on - strand, within ECD_02534at 2646.145 kb on - strand, within ECD_02534at 2646.177 kb on + strand, within ECD_02534at 2646.178 kb on - strand, within ECD_02534at 2646.345 kb on + strand, within ECD_02534at 2646.346 kb on - strand, within ECD_02534at 2646.452 kb on - strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.473 kb on + strand, within ECD_02534at 2646.474 kb on - strand, within ECD_02534at 2646.474 kb on - strand, within ECD_02534at 2646.474 kb on - strand, within ECD_02534at 2646.474 kb on - strand, within ECD_02534at 2646.535 kb on - strand, within ECD_02534at 2646.558 kb on + strand, within ECD_02534at 2646.558 kb on + strand, within ECD_02534at 2646.699 kb on + strand, within ECD_02534at 2646.699 kb on + strand, within ECD_02534at 2646.699 kb on + strand, within ECD_02534at 2646.699 kb on + strand, within ECD_02534at 2646.699 kb on + strand, within ECD_02534at 2646.700 kb on - strand, within ECD_02534at 2646.700 kb on - strand, within ECD_02534at 2646.749 kb on + strand, within ECD_02534at 2646.749 kb on + strand, within ECD_02534at 2646.749 kb on + strand, within ECD_02534at 2646.750 kb on - strand, within ECD_02534at 2646.822 kb on + strand, within ECD_02534

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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2,643,674 - ECD_02532 0.33 +1.2
2,643,674 - ECD_02532 0.33 +1.7
2,643,695 + ECD_02532 0.35 -1.6
2,643,696 - ECD_02532 0.35 -0.1
2,643,785 - ECD_02532 0.44 +2.0
2,643,871 + ECD_02532 0.53 -0.7
2,643,949 + ECD_02532 0.61 +0.1
2,643,953 - ECD_02532 0.62 +0.3
2,643,956 + ECD_02532 0.62 -0.8
2,643,956 + ECD_02532 0.62 -0.9
2,643,956 + ECD_02532 0.62 +1.5
2,643,957 - ECD_02532 0.62 +1.6
2,643,957 - ECD_02532 0.62 +2.2
2,643,957 - ECD_02532 0.62 +2.0
2,643,963 + ECD_02532 0.63 -0.1
2,643,964 - ECD_02532 0.63 +0.5
2,643,964 - ECD_02532 0.63 +2.5
2,644,048 + ECD_02532 0.72 +0.1
2,644,066 + ECD_02532 0.73 -1.5
2,644,066 + ECD_02532 0.73 +0.3
2,644,067 - ECD_02532 0.74 +1.1
2,644,067 - ECD_02532 0.74 +0.3
2,644,067 - ECD_02532 0.74 +1.9
2,644,137 + ECD_02532 0.81 +0.8
2,644,137 + ECD_02532 0.81 -1.8
2,644,270 + +1.4
2,644,270 + -0.5
2,644,271 - -1.4
2,644,271 - +1.5
2,644,271 - -0.7
2,644,516 - -2.1
2,644,636 + +0.7
2,644,871 + ECD_02533 0.16 -0.8
2,644,885 + ECD_02533 0.18 -3.0
2,645,023 + ECD_02533 0.29 -1.6
2,645,034 - ECD_02533 0.30 -0.3
2,645,081 + ECD_02533 0.34 -3.1
2,645,216 + ECD_02533 0.45 -2.7
2,645,227 + ECD_02533 0.46 -3.6
2,645,227 + ECD_02533 0.46 -2.6
2,645,227 + ECD_02533 0.46 -1.1
2,645,227 + ECD_02533 0.46 -1.3
2,645,230 + ECD_02533 0.46 -2.6
2,645,230 + ECD_02533 0.46 -0.8
2,645,230 + ECD_02533 0.46 -0.6
2,645,233 + ECD_02533 0.46 -1.8
2,645,266 + ECD_02533 0.49 -3.3
2,645,333 + ECD_02533 0.55 -1.9
2,645,451 + ECD_02533 0.65 -3.5
2,645,451 + ECD_02533 0.65 -2.8
2,645,452 - ECD_02533 0.65 -1.7
2,645,459 + ECD_02533 0.65 -1.8
2,645,460 - ECD_02533 0.65 -2.4
2,645,480 + ECD_02533 0.67 -0.8
2,645,483 + ECD_02533 0.67 -3.0
2,645,507 + ECD_02533 0.69 -3.0
2,645,534 - ECD_02533 0.71 -1.8
2,645,601 + ECD_02533 0.77 -0.4
2,645,601 + ECD_02533 0.77 -2.3
2,645,601 + ECD_02533 0.77 -0.7
2,645,607 + ECD_02533 0.78 +0.8
2,645,607 + ECD_02533 0.78 -1.8
2,645,608 - ECD_02533 0.78 -1.7
2,645,627 + ECD_02533 0.79 -1.6
2,645,627 + ECD_02533 0.79 -1.1
2,645,627 + ECD_02533 0.79 -1.7
2,645,627 + ECD_02533 0.79 -1.0
2,645,627 + ECD_02533 0.79 -1.4
2,645,627 + ECD_02533 0.79 -3.2
2,645,627 + ECD_02533 0.79 -0.6
2,645,627 + ECD_02533 0.79 -0.6
2,645,627 + ECD_02533 0.79 -2.3
2,645,628 - ECD_02533 0.79 -0.3
2,645,628 - ECD_02533 0.79 -0.7
2,645,628 - ECD_02533 0.79 -1.7
2,645,628 - ECD_02533 0.79 -1.7
2,645,741 + ECD_02533 0.89 -4.1
2,645,741 + ECD_02533 0.89 -1.0
2,645,808 + -1.5
2,645,808 + -1.6
2,645,808 + -2.4
2,645,808 + -2.3
2,645,808 + -1.6
2,645,808 + -1.0
2,645,808 + -3.3
2,645,808 + -1.3
2,645,808 + -1.2
2,645,808 + -3.2
2,645,808 + -1.7
2,645,808 + -1.8
2,645,808 + -2.2
2,645,808 + -2.4
2,645,808 + -3.0
2,645,808 + -1.1
2,645,808 + -4.1
2,645,808 + -3.3
2,645,808 + -2.6
2,645,808 + -1.9
2,645,808 + -4.6
2,645,809 - -2.5
2,645,809 - -1.7
2,645,809 - -2.4
2,645,809 - -2.7
2,645,809 - -1.9
2,645,809 - -2.1
2,645,809 - +0.8
2,645,848 + -2.1
2,645,848 + -3.4
2,645,848 + +0.3
2,645,848 + -2.0
2,645,849 - -2.0
2,645,849 - -2.1
2,645,849 - -1.2
2,645,849 - -0.0
2,645,867 + -2.3
2,645,867 + -2.0
2,645,868 - -2.0
2,645,943 + -0.8
2,645,943 + -3.0
2,645,995 - ECD_02534 0.12 -0.3
2,646,022 - ECD_02534 0.14 -1.3
2,646,042 + ECD_02534 0.16 -2.3
2,646,043 - ECD_02534 0.16 -2.2
2,646,142 + ECD_02534 0.26 -2.7
2,646,142 + ECD_02534 0.26 -2.6
2,646,142 + ECD_02534 0.26 -3.4
2,646,142 + ECD_02534 0.26 -2.1
2,646,142 + ECD_02534 0.26 -1.3
2,646,142 + ECD_02534 0.26 -2.4
2,646,142 + ECD_02534 0.26 -3.6
2,646,142 + ECD_02534 0.26 -2.5
2,646,142 + ECD_02534 0.26 -2.4
2,646,142 + ECD_02534 0.26 -3.0
2,646,142 + ECD_02534 0.26 -3.0
2,646,142 + ECD_02534 0.26 -4.1
2,646,142 + ECD_02534 0.26 -3.9
2,646,142 + ECD_02534 0.26 -1.7
2,646,142 + ECD_02534 0.26 -2.8
2,646,143 - ECD_02534 0.26 -1.0
2,646,143 - ECD_02534 0.26 -2.9
2,646,143 - ECD_02534 0.26 -1.0
2,646,143 - ECD_02534 0.26 -1.6
2,646,143 - ECD_02534 0.26 -2.4
2,646,143 - ECD_02534 0.26 -0.6
2,646,143 - ECD_02534 0.26 -3.5
2,646,143 - ECD_02534 0.26 -1.7
2,646,144 + ECD_02534 0.26 +0.5
2,646,144 + ECD_02534 0.26 -1.7
2,646,144 + ECD_02534 0.26 -2.5
2,646,145 - ECD_02534 0.26 -2.0
2,646,145 - ECD_02534 0.26 -2.5
2,646,177 + ECD_02534 0.29 -4.0
2,646,178 - ECD_02534 0.29 -3.7
2,646,345 + ECD_02534 0.45 -2.8
2,646,346 - ECD_02534 0.45 -2.5
2,646,452 - ECD_02534 0.55 -0.5
2,646,473 + ECD_02534 0.57 -3.2
2,646,473 + ECD_02534 0.57 -4.2
2,646,473 + ECD_02534 0.57 -4.1
2,646,473 + ECD_02534 0.57 -1.0
2,646,473 + ECD_02534 0.57 -0.2
2,646,473 + ECD_02534 0.57 -2.3
2,646,473 + ECD_02534 0.57 -2.8
2,646,473 + ECD_02534 0.57 -1.3
2,646,473 + ECD_02534 0.57 -1.5
2,646,473 + ECD_02534 0.57 -1.3
2,646,473 + ECD_02534 0.57 -1.8
2,646,473 + ECD_02534 0.57 -1.8
2,646,474 - ECD_02534 0.57 -2.0
2,646,474 - ECD_02534 0.57 -2.0
2,646,474 - ECD_02534 0.57 -1.8
2,646,474 - ECD_02534 0.57 -1.0
2,646,535 - ECD_02534 0.63 -1.8
2,646,558 + ECD_02534 0.65 -1.0
2,646,558 + ECD_02534 0.65 -0.5
2,646,699 + ECD_02534 0.78 -2.3
2,646,699 + ECD_02534 0.78 -4.1
2,646,699 + ECD_02534 0.78 -1.3
2,646,699 + ECD_02534 0.78 -1.2
2,646,699 + ECD_02534 0.78 -1.3
2,646,700 - ECD_02534 0.78 -1.8
2,646,700 - ECD_02534 0.78 -2.5
2,646,749 + ECD_02534 0.83 -0.7
2,646,749 + ECD_02534 0.83 -2.2
2,646,749 + ECD_02534 0.83 -3.8
2,646,750 - ECD_02534 0.83 -2.4
2,646,822 + ECD_02534 0.89 -0.8

Or see this region's nucleotide sequence