Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00006 and ECD_02482 are separated by 443 nucleotides ECD_02482 and ECD_02483 are separated by 129 nucleotides ECD_02483 and ECD_02484 overlap by 4 nucleotides
ECD_r00006: ECD_r00006 - 16S ribosomal RNA, at 2,596,130 to 2,597,671
_r00006
ECD_02482: ECD_02482 - protein disaggregation chaperone, at 2,598,115 to 2,600,688
_02482
ECD_02483: ECD_02483 - UPF0124 family protein, at 2,600,818 to 2,601,549
_02483
ECD_02484: ECD_02484 - 23S rRNA pseudouridine(1911,1915,1917) synthase, at 2,601,546 to 2,602,526
_02484
Position (kb)
2598
2599
2600
2601 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2598.077 kb on - strand at 2598.078 kb on + strand at 2598.166 kb on - strand at 2598.191 kb on - strand at 2598.191 kb on - strand at 2598.254 kb on + strand at 2598.339 kb on + strand at 2598.342 kb on - strand at 2598.488 kb on + strand, within ECD_02482 at 2598.544 kb on - strand, within ECD_02482 at 2598.555 kb on + strand, within ECD_02482 at 2598.556 kb on - strand, within ECD_02482 at 2598.556 kb on - strand, within ECD_02482 at 2598.556 kb on - strand, within ECD_02482 at 2598.625 kb on - strand, within ECD_02482 at 2598.625 kb on - strand, within ECD_02482 at 2598.625 kb on - strand, within ECD_02482 at 2598.790 kb on - strand, within ECD_02482 at 2598.826 kb on - strand, within ECD_02482 at 2598.844 kb on - strand, within ECD_02482 at 2598.946 kb on - strand, within ECD_02482 at 2598.946 kb on - strand, within ECD_02482 at 2598.946 kb on - strand, within ECD_02482 at 2598.946 kb on - strand, within ECD_02482 at 2599.101 kb on + strand, within ECD_02482 at 2599.105 kb on - strand, within ECD_02482 at 2599.120 kb on - strand, within ECD_02482 at 2599.120 kb on - strand, within ECD_02482 at 2599.120 kb on - strand, within ECD_02482 at 2599.316 kb on - strand, within ECD_02482 at 2599.326 kb on - strand, within ECD_02482 at 2599.434 kb on + strand, within ECD_02482 at 2599.550 kb on + strand, within ECD_02482 at 2599.594 kb on - strand, within ECD_02482 at 2599.653 kb on + strand, within ECD_02482 at 2599.725 kb on - strand, within ECD_02482 at 2599.757 kb on - strand, within ECD_02482 at 2599.757 kb on - strand, within ECD_02482 at 2599.845 kb on + strand, within ECD_02482 at 2599.845 kb on + strand, within ECD_02482 at 2599.845 kb on + strand, within ECD_02482 at 2599.846 kb on - strand, within ECD_02482 at 2599.846 kb on - strand, within ECD_02482 at 2599.846 kb on - strand, within ECD_02482 at 2599.846 kb on - strand, within ECD_02482 at 2599.846 kb on - strand, within ECD_02482 at 2599.846 kb on - strand, within ECD_02482 at 2599.850 kb on - strand, within ECD_02482 at 2599.850 kb on - strand, within ECD_02482 at 2600.019 kb on + strand, within ECD_02482 at 2600.020 kb on - strand, within ECD_02482 at 2600.022 kb on + strand, within ECD_02482 at 2600.089 kb on - strand, within ECD_02482 at 2600.095 kb on - strand, within ECD_02482 at 2600.197 kb on - strand, within ECD_02482 at 2600.280 kb on + strand, within ECD_02482 at 2600.281 kb on - strand, within ECD_02482 at 2600.281 kb on - strand, within ECD_02482 at 2600.281 kb on - strand, within ECD_02482 at 2600.373 kb on + strand, within ECD_02482 at 2600.373 kb on + strand, within ECD_02482 at 2600.374 kb on - strand, within ECD_02482 at 2600.380 kb on - strand, within ECD_02482 at 2600.380 kb on - strand, within ECD_02482 at 2600.380 kb on - strand, within ECD_02482 at 2600.415 kb on + strand, within ECD_02482 at 2600.486 kb on - strand at 2600.486 kb on - strand at 2600.500 kb on - strand at 2600.524 kb on + strand at 2600.668 kb on - strand at 2600.728 kb on - strand at 2600.820 kb on - strand at 2600.898 kb on - strand, within ECD_02483 at 2600.898 kb on - strand, within ECD_02483 at 2600.901 kb on + strand, within ECD_02483 at 2600.901 kb on + strand, within ECD_02483 at 2600.901 kb on + strand, within ECD_02483 at 2600.902 kb on - strand, within ECD_02483 at 2600.902 kb on - strand, within ECD_02483 at 2600.902 kb on - strand, within ECD_02483 at 2600.902 kb on - strand, within ECD_02483 at 2600.902 kb on - strand, within ECD_02483 at 2600.967 kb on - strand, within ECD_02483 at 2600.967 kb on - strand, within ECD_02483 at 2600.982 kb on - strand, within ECD_02483 at 2600.982 kb on - strand, within ECD_02483 at 2600.986 kb on - strand, within ECD_02483 at 2600.986 kb on - strand, within ECD_02483 at 2601.010 kb on - strand, within ECD_02483 at 2601.118 kb on - strand, within ECD_02483 at 2601.268 kb on - strand, within ECD_02483 at 2601.268 kb on - strand, within ECD_02483 at 2601.274 kb on - strand, within ECD_02483 at 2601.274 kb on - strand, within ECD_02483 at 2601.275 kb on + strand, within ECD_02483 at 2601.276 kb on - strand, within ECD_02483 at 2601.276 kb on - strand, within ECD_02483 at 2601.302 kb on + strand, within ECD_02483 at 2601.303 kb on - strand, within ECD_02483 at 2601.340 kb on + strand, within ECD_02483 at 2601.364 kb on - strand, within ECD_02483 at 2601.484 kb on - strand at 2601.495 kb on + strand at 2601.550 kb on - strand at 2601.569 kb on + strand at 2601.569 kb on + strand at 2601.570 kb on - strand at 2601.570 kb on - strand at 2601.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,598,077 - +0.5 2,598,078 + -0.0 2,598,166 - -0.4 2,598,191 - -0.5 2,598,191 - +0.4 2,598,254 + +0.1 2,598,339 + +1.2 2,598,342 - -0.7 2,598,488 + ECD_02482 0.14 +1.7 2,598,544 - ECD_02482 0.17 -0.2 2,598,555 + ECD_02482 0.17 +0.9 2,598,556 - ECD_02482 0.17 -0.4 2,598,556 - ECD_02482 0.17 +0.4 2,598,556 - ECD_02482 0.17 +0.9 2,598,625 - ECD_02482 0.20 +0.4 2,598,625 - ECD_02482 0.20 +0.9 2,598,625 - ECD_02482 0.20 +0.6 2,598,790 - ECD_02482 0.26 -0.4 2,598,826 - ECD_02482 0.28 +0.8 2,598,844 - ECD_02482 0.28 +0.1 2,598,946 - ECD_02482 0.32 +1.2 2,598,946 - ECD_02482 0.32 +0.7 2,598,946 - ECD_02482 0.32 +0.3 2,598,946 - ECD_02482 0.32 -0.1 2,599,101 + ECD_02482 0.38 +0.3 2,599,105 - ECD_02482 0.38 -0.8 2,599,120 - ECD_02482 0.39 +0.4 2,599,120 - ECD_02482 0.39 +0.2 2,599,120 - ECD_02482 0.39 -0.2 2,599,316 - ECD_02482 0.47 +0.9 2,599,326 - ECD_02482 0.47 -1.2 2,599,434 + ECD_02482 0.51 +3.1 2,599,550 + ECD_02482 0.56 +0.7 2,599,594 - ECD_02482 0.57 -0.0 2,599,653 + ECD_02482 0.60 -0.5 2,599,725 - ECD_02482 0.63 +2.0 2,599,757 - ECD_02482 0.64 -0.3 2,599,757 - ECD_02482 0.64 -0.3 2,599,845 + ECD_02482 0.67 +1.7 2,599,845 + ECD_02482 0.67 -1.5 2,599,845 + ECD_02482 0.67 -0.7 2,599,846 - ECD_02482 0.67 +0.7 2,599,846 - ECD_02482 0.67 +0.1 2,599,846 - ECD_02482 0.67 -0.6 2,599,846 - ECD_02482 0.67 +0.1 2,599,846 - ECD_02482 0.67 -0.6 2,599,846 - ECD_02482 0.67 -0.6 2,599,850 - ECD_02482 0.67 -0.7 2,599,850 - ECD_02482 0.67 +0.2 2,600,019 + ECD_02482 0.74 +1.5 2,600,020 - ECD_02482 0.74 +0.2 2,600,022 + ECD_02482 0.74 +1.3 2,600,089 - ECD_02482 0.77 -0.5 2,600,095 - ECD_02482 0.77 +1.4 2,600,197 - ECD_02482 0.81 +1.8 2,600,280 + ECD_02482 0.84 +2.2 2,600,281 - ECD_02482 0.84 +2.3 2,600,281 - ECD_02482 0.84 +1.9 2,600,281 - ECD_02482 0.84 -1.0 2,600,373 + ECD_02482 0.88 +0.4 2,600,373 + ECD_02482 0.88 -1.6 2,600,374 - ECD_02482 0.88 -0.2 2,600,380 - ECD_02482 0.88 -0.8 2,600,380 - ECD_02482 0.88 -0.2 2,600,380 - ECD_02482 0.88 -0.1 2,600,415 + ECD_02482 0.89 +1.2 2,600,486 - -0.2 2,600,486 - -1.2 2,600,500 - +0.3 2,600,524 + +1.3 2,600,668 - +0.7 2,600,728 - +0.8 2,600,820 - +1.3 2,600,898 - ECD_02483 0.11 -1.3 2,600,898 - ECD_02483 0.11 -2.0 2,600,901 + ECD_02483 0.11 -0.6 2,600,901 + ECD_02483 0.11 -0.1 2,600,901 + ECD_02483 0.11 +1.6 2,600,902 - ECD_02483 0.11 +0.2 2,600,902 - ECD_02483 0.11 -1.1 2,600,902 - ECD_02483 0.11 -0.9 2,600,902 - ECD_02483 0.11 -0.8 2,600,902 - ECD_02483 0.11 -0.2 2,600,967 - ECD_02483 0.20 -0.0 2,600,967 - ECD_02483 0.20 -1.2 2,600,982 - ECD_02483 0.22 -0.3 2,600,982 - ECD_02483 0.22 -0.7 2,600,986 - ECD_02483 0.23 -1.4 2,600,986 - ECD_02483 0.23 -0.1 2,601,010 - ECD_02483 0.26 -1.7 2,601,118 - ECD_02483 0.41 -0.9 2,601,268 - ECD_02483 0.61 -0.6 2,601,268 - ECD_02483 0.61 +0.2 2,601,274 - ECD_02483 0.62 -0.4 2,601,274 - ECD_02483 0.62 +0.2 2,601,275 + ECD_02483 0.62 +1.2 2,601,276 - ECD_02483 0.63 -1.4 2,601,276 - ECD_02483 0.63 +0.4 2,601,302 + ECD_02483 0.66 -0.7 2,601,303 - ECD_02483 0.66 -1.2 2,601,340 + ECD_02483 0.71 -1.9 2,601,364 - ECD_02483 0.75 +0.2 2,601,484 - -0.1 2,601,495 + -0.4 2,601,550 - +1.3 2,601,569 + +0.4 2,601,569 + -1.1 2,601,570 - -1.1 2,601,570 - +0.9 2,601,615 - +0.0
Or see this region's nucleotide sequence