Strain Fitness in Escherichia coli BL21 around ECD_02482

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_r00006 and ECD_02482 are separated by 443 nucleotidesECD_02482 and ECD_02483 are separated by 129 nucleotidesECD_02483 and ECD_02484 overlap by 4 nucleotides ECD_r00006: ECD_r00006 - 16S ribosomal RNA, at 2,596,130 to 2,597,671 _r00006 ECD_02482: ECD_02482 - protein disaggregation chaperone, at 2,598,115 to 2,600,688 _02482 ECD_02483: ECD_02483 - UPF0124 family protein, at 2,600,818 to 2,601,549 _02483 ECD_02484: ECD_02484 - 23S rRNA pseudouridine(1911,1915,1917) synthase, at 2,601,546 to 2,602,526 _02484 Position (kb) 2598 2599 2600 2601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2598.077 kb on - strandat 2598.078 kb on + strandat 2598.166 kb on - strandat 2598.191 kb on - strandat 2598.191 kb on - strandat 2598.254 kb on + strandat 2598.339 kb on + strandat 2598.342 kb on - strandat 2598.488 kb on + strand, within ECD_02482at 2598.544 kb on - strand, within ECD_02482at 2598.555 kb on + strand, within ECD_02482at 2598.556 kb on - strand, within ECD_02482at 2598.556 kb on - strand, within ECD_02482at 2598.556 kb on - strand, within ECD_02482at 2598.625 kb on - strand, within ECD_02482at 2598.625 kb on - strand, within ECD_02482at 2598.625 kb on - strand, within ECD_02482at 2598.790 kb on - strand, within ECD_02482at 2598.826 kb on - strand, within ECD_02482at 2598.844 kb on - strand, within ECD_02482at 2598.946 kb on - strand, within ECD_02482at 2598.946 kb on - strand, within ECD_02482at 2598.946 kb on - strand, within ECD_02482at 2598.946 kb on - strand, within ECD_02482at 2599.101 kb on + strand, within ECD_02482at 2599.105 kb on - strand, within ECD_02482at 2599.120 kb on - strand, within ECD_02482at 2599.120 kb on - strand, within ECD_02482at 2599.120 kb on - strand, within ECD_02482at 2599.316 kb on - strand, within ECD_02482at 2599.326 kb on - strand, within ECD_02482at 2599.434 kb on + strand, within ECD_02482at 2599.550 kb on + strand, within ECD_02482at 2599.594 kb on - strand, within ECD_02482at 2599.653 kb on + strand, within ECD_02482at 2599.725 kb on - strand, within ECD_02482at 2599.757 kb on - strand, within ECD_02482at 2599.757 kb on - strand, within ECD_02482at 2599.845 kb on + strand, within ECD_02482at 2599.845 kb on + strand, within ECD_02482at 2599.845 kb on + strand, within ECD_02482at 2599.846 kb on - strand, within ECD_02482at 2599.846 kb on - strand, within ECD_02482at 2599.846 kb on - strand, within ECD_02482at 2599.846 kb on - strand, within ECD_02482at 2599.846 kb on - strand, within ECD_02482at 2599.846 kb on - strand, within ECD_02482at 2599.850 kb on - strand, within ECD_02482at 2599.850 kb on - strand, within ECD_02482at 2600.019 kb on + strand, within ECD_02482at 2600.020 kb on - strand, within ECD_02482at 2600.022 kb on + strand, within ECD_02482at 2600.089 kb on - strand, within ECD_02482at 2600.095 kb on - strand, within ECD_02482at 2600.197 kb on - strand, within ECD_02482at 2600.280 kb on + strand, within ECD_02482at 2600.281 kb on - strand, within ECD_02482at 2600.281 kb on - strand, within ECD_02482at 2600.281 kb on - strand, within ECD_02482at 2600.373 kb on + strand, within ECD_02482at 2600.373 kb on + strand, within ECD_02482at 2600.374 kb on - strand, within ECD_02482at 2600.380 kb on - strand, within ECD_02482at 2600.380 kb on - strand, within ECD_02482at 2600.380 kb on - strand, within ECD_02482at 2600.415 kb on + strand, within ECD_02482at 2600.486 kb on - strandat 2600.486 kb on - strandat 2600.500 kb on - strandat 2600.524 kb on + strandat 2600.668 kb on - strandat 2600.728 kb on - strandat 2600.820 kb on - strandat 2600.898 kb on - strand, within ECD_02483at 2600.898 kb on - strand, within ECD_02483at 2600.901 kb on + strand, within ECD_02483at 2600.901 kb on + strand, within ECD_02483at 2600.901 kb on + strand, within ECD_02483at 2600.902 kb on - strand, within ECD_02483at 2600.902 kb on - strand, within ECD_02483at 2600.902 kb on - strand, within ECD_02483at 2600.902 kb on - strand, within ECD_02483at 2600.902 kb on - strand, within ECD_02483at 2600.967 kb on - strand, within ECD_02483at 2600.967 kb on - strand, within ECD_02483at 2600.982 kb on - strand, within ECD_02483at 2600.982 kb on - strand, within ECD_02483at 2600.986 kb on - strand, within ECD_02483at 2600.986 kb on - strand, within ECD_02483at 2601.010 kb on - strand, within ECD_02483at 2601.118 kb on - strand, within ECD_02483at 2601.268 kb on - strand, within ECD_02483at 2601.268 kb on - strand, within ECD_02483at 2601.274 kb on - strand, within ECD_02483at 2601.274 kb on - strand, within ECD_02483at 2601.275 kb on + strand, within ECD_02483at 2601.276 kb on - strand, within ECD_02483at 2601.276 kb on - strand, within ECD_02483at 2601.302 kb on + strand, within ECD_02483at 2601.303 kb on - strand, within ECD_02483at 2601.340 kb on + strand, within ECD_02483at 2601.364 kb on - strand, within ECD_02483at 2601.484 kb on - strandat 2601.495 kb on + strandat 2601.550 kb on - strandat 2601.569 kb on + strandat 2601.569 kb on + strandat 2601.570 kb on - strandat 2601.570 kb on - strandat 2601.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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2,598,077 - +0.5
2,598,078 + -0.0
2,598,166 - -0.4
2,598,191 - -0.5
2,598,191 - +0.4
2,598,254 + +0.1
2,598,339 + +1.2
2,598,342 - -0.7
2,598,488 + ECD_02482 0.14 +1.7
2,598,544 - ECD_02482 0.17 -0.2
2,598,555 + ECD_02482 0.17 +0.9
2,598,556 - ECD_02482 0.17 -0.4
2,598,556 - ECD_02482 0.17 +0.4
2,598,556 - ECD_02482 0.17 +0.9
2,598,625 - ECD_02482 0.20 +0.4
2,598,625 - ECD_02482 0.20 +0.9
2,598,625 - ECD_02482 0.20 +0.6
2,598,790 - ECD_02482 0.26 -0.4
2,598,826 - ECD_02482 0.28 +0.8
2,598,844 - ECD_02482 0.28 +0.1
2,598,946 - ECD_02482 0.32 +1.2
2,598,946 - ECD_02482 0.32 +0.7
2,598,946 - ECD_02482 0.32 +0.3
2,598,946 - ECD_02482 0.32 -0.1
2,599,101 + ECD_02482 0.38 +0.3
2,599,105 - ECD_02482 0.38 -0.8
2,599,120 - ECD_02482 0.39 +0.4
2,599,120 - ECD_02482 0.39 +0.2
2,599,120 - ECD_02482 0.39 -0.2
2,599,316 - ECD_02482 0.47 +0.9
2,599,326 - ECD_02482 0.47 -1.2
2,599,434 + ECD_02482 0.51 +3.1
2,599,550 + ECD_02482 0.56 +0.7
2,599,594 - ECD_02482 0.57 -0.0
2,599,653 + ECD_02482 0.60 -0.5
2,599,725 - ECD_02482 0.63 +2.0
2,599,757 - ECD_02482 0.64 -0.3
2,599,757 - ECD_02482 0.64 -0.3
2,599,845 + ECD_02482 0.67 +1.7
2,599,845 + ECD_02482 0.67 -1.5
2,599,845 + ECD_02482 0.67 -0.7
2,599,846 - ECD_02482 0.67 +0.7
2,599,846 - ECD_02482 0.67 +0.1
2,599,846 - ECD_02482 0.67 -0.6
2,599,846 - ECD_02482 0.67 +0.1
2,599,846 - ECD_02482 0.67 -0.6
2,599,846 - ECD_02482 0.67 -0.6
2,599,850 - ECD_02482 0.67 -0.7
2,599,850 - ECD_02482 0.67 +0.2
2,600,019 + ECD_02482 0.74 +1.5
2,600,020 - ECD_02482 0.74 +0.2
2,600,022 + ECD_02482 0.74 +1.3
2,600,089 - ECD_02482 0.77 -0.5
2,600,095 - ECD_02482 0.77 +1.4
2,600,197 - ECD_02482 0.81 +1.8
2,600,280 + ECD_02482 0.84 +2.2
2,600,281 - ECD_02482 0.84 +2.3
2,600,281 - ECD_02482 0.84 +1.9
2,600,281 - ECD_02482 0.84 -1.0
2,600,373 + ECD_02482 0.88 +0.4
2,600,373 + ECD_02482 0.88 -1.6
2,600,374 - ECD_02482 0.88 -0.2
2,600,380 - ECD_02482 0.88 -0.8
2,600,380 - ECD_02482 0.88 -0.2
2,600,380 - ECD_02482 0.88 -0.1
2,600,415 + ECD_02482 0.89 +1.2
2,600,486 - -0.2
2,600,486 - -1.2
2,600,500 - +0.3
2,600,524 + +1.3
2,600,668 - +0.7
2,600,728 - +0.8
2,600,820 - +1.3
2,600,898 - ECD_02483 0.11 -1.3
2,600,898 - ECD_02483 0.11 -2.0
2,600,901 + ECD_02483 0.11 -0.6
2,600,901 + ECD_02483 0.11 -0.1
2,600,901 + ECD_02483 0.11 +1.6
2,600,902 - ECD_02483 0.11 +0.2
2,600,902 - ECD_02483 0.11 -1.1
2,600,902 - ECD_02483 0.11 -0.9
2,600,902 - ECD_02483 0.11 -0.8
2,600,902 - ECD_02483 0.11 -0.2
2,600,967 - ECD_02483 0.20 -0.0
2,600,967 - ECD_02483 0.20 -1.2
2,600,982 - ECD_02483 0.22 -0.3
2,600,982 - ECD_02483 0.22 -0.7
2,600,986 - ECD_02483 0.23 -1.4
2,600,986 - ECD_02483 0.23 -0.1
2,601,010 - ECD_02483 0.26 -1.7
2,601,118 - ECD_02483 0.41 -0.9
2,601,268 - ECD_02483 0.61 -0.6
2,601,268 - ECD_02483 0.61 +0.2
2,601,274 - ECD_02483 0.62 -0.4
2,601,274 - ECD_02483 0.62 +0.2
2,601,275 + ECD_02483 0.62 +1.2
2,601,276 - ECD_02483 0.63 -1.4
2,601,276 - ECD_02483 0.63 +0.4
2,601,302 + ECD_02483 0.66 -0.7
2,601,303 - ECD_02483 0.66 -1.2
2,601,340 + ECD_02483 0.71 -1.9
2,601,364 - ECD_02483 0.75 +0.2
2,601,484 - -0.1
2,601,495 + -0.4
2,601,550 - +1.3
2,601,569 + +0.4
2,601,569 + -1.1
2,601,570 - -1.1
2,601,570 - +0.9
2,601,615 - +0.0

Or see this region's nucleotide sequence