Strain Fitness in Escherichia coli BL21 around ECD_02474

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02472 and ECD_02473 are separated by 55 nucleotidesECD_02473 and ECD_02474 are separated by 304 nucleotidesECD_02474 and ECD_02475 are separated by 47 nucleotides ECD_02472: ECD_02472 - cysteine and O-acetylserine exporter, at 2,582,023 to 2,582,610 _02472 ECD_02473: ECD_02473 - autonomous glycyl radical cofactor, at 2,582,666 to 2,583,049 _02473 ECD_02474: ECD_02474 - uracil-DNA-glycosylase, at 2,583,354 to 2,584,043 _02474 ECD_02475: ECD_02475 - putative methyltransferase, at 2,584,091 to 2,585,128 _02475 Position (kb) 2583 2584 2585Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2582.389 kb on + strand, within ECD_02472at 2582.390 kb on - strand, within ECD_02472at 2582.543 kb on - strand, within ECD_02472at 2582.595 kb on - strandat 2582.649 kb on - strandat 2582.661 kb on - strandat 2582.661 kb on - strandat 2582.668 kb on - strandat 2582.789 kb on - strand, within ECD_02473at 2582.913 kb on - strand, within ECD_02473at 2583.044 kb on - strandat 2583.128 kb on - strandat 2583.129 kb on + strandat 2583.129 kb on + strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.131 kb on + strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.318 kb on + strandat 2583.323 kb on + strandat 2583.627 kb on - strand, within ECD_02474at 2583.630 kb on + strand, within ECD_02474at 2583.630 kb on + strand, within ECD_02474at 2583.630 kb on + strand, within ECD_02474at 2583.632 kb on + strand, within ECD_02474at 2583.647 kb on + strand, within ECD_02474at 2583.881 kb on + strand, within ECD_02474at 2584.022 kb on - strandat 2584.024 kb on + strandat 2584.231 kb on - strand, within ECD_02475at 2584.231 kb on - strand, within ECD_02475at 2584.511 kb on - strand, within ECD_02475at 2584.669 kb on - strand, within ECD_02475at 2584.669 kb on - strand, within ECD_02475at 2584.669 kb on - strand, within ECD_02475

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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2,582,389 + ECD_02472 0.62 -0.4
2,582,390 - ECD_02472 0.62 +1.5
2,582,543 - ECD_02472 0.88 +0.5
2,582,595 - +1.0
2,582,649 - -0.2
2,582,661 - +1.3
2,582,661 - -0.5
2,582,668 - -0.6
2,582,789 - ECD_02473 0.32 -1.2
2,582,913 - ECD_02473 0.64 +0.9
2,583,044 - -0.1
2,583,128 - -1.2
2,583,129 + +1.0
2,583,129 + +0.0
2,583,130 - +0.4
2,583,130 - +0.2
2,583,130 - +0.1
2,583,130 - -0.3
2,583,130 - +0.7
2,583,130 - -0.2
2,583,131 + +2.1
2,583,132 - -3.2
2,583,132 - -0.6
2,583,132 - +1.4
2,583,132 - -1.0
2,583,132 - +0.4
2,583,318 + -1.7
2,583,323 + -1.1
2,583,627 - ECD_02474 0.40 +1.2
2,583,630 + ECD_02474 0.40 +0.5
2,583,630 + ECD_02474 0.40 +0.4
2,583,630 + ECD_02474 0.40 -1.2
2,583,632 + ECD_02474 0.40 -1.7
2,583,647 + ECD_02474 0.42 +0.4
2,583,881 + ECD_02474 0.76 -1.3
2,584,022 - +0.7
2,584,024 + +0.6
2,584,231 - ECD_02475 0.13 +1.0
2,584,231 - ECD_02475 0.13 +0.3
2,584,511 - ECD_02475 0.40 +0.7
2,584,669 - ECD_02475 0.56 -3.0
2,584,669 - ECD_02475 0.56 +0.8
2,584,669 - ECD_02475 0.56 -0.1

Or see this region's nucleotide sequence