Strain Fitness in Escherichia coli BL21 around ECD_02412

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02411 and ECD_02412 are separated by 0 nucleotidesECD_02412 and ECD_02413 are separated by 206 nucleotides ECD_02411: ECD_02411 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein, at 2,509,493 to 2,511,805 _02411 ECD_02412: ECD_02412 - bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein, at 2,511,806 to 2,516,767 _02412 ECD_02413: ECD_02413 - 3-mercaptopyruvate sulfurtransferase, at 2,516,974 to 2,517,819 _02413 Position (kb) 2511 2512 2513 2514 2515 2516 2517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2510.983 kb on + strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2511.146 kb on - strand, within ECD_02411at 2511.237 kb on + strand, within ECD_02411at 2511.268 kb on - strand, within ECD_02411at 2511.327 kb on + strand, within ECD_02411at 2511.327 kb on + strand, within ECD_02411at 2511.470 kb on - strand, within ECD_02411at 2511.559 kb on - strand, within ECD_02411at 2511.579 kb on + strandat 2511.580 kb on - strandat 2511.807 kb on + strandat 2511.808 kb on - strandat 2511.808 kb on - strandat 2511.808 kb on - strandat 2511.864 kb on + strandat 2511.864 kb on + strandat 2511.864 kb on + strandat 2511.865 kb on - strandat 2511.865 kb on - strandat 2511.865 kb on - strandat 2511.897 kb on + strandat 2512.192 kb on + strandat 2512.219 kb on + strandat 2512.220 kb on - strandat 2512.229 kb on - strandat 2512.237 kb on + strandat 2512.460 kb on - strand, within ECD_02412at 2512.548 kb on + strand, within ECD_02412at 2512.548 kb on + strand, within ECD_02412at 2512.618 kb on + strand, within ECD_02412at 2512.619 kb on - strand, within ECD_02412at 2512.619 kb on - strand, within ECD_02412at 2512.908 kb on - strand, within ECD_02412at 2512.912 kb on - strand, within ECD_02412at 2513.001 kb on + strand, within ECD_02412at 2513.002 kb on - strand, within ECD_02412at 2513.170 kb on - strand, within ECD_02412at 2513.240 kb on - strand, within ECD_02412at 2513.420 kb on - strand, within ECD_02412at 2513.524 kb on + strand, within ECD_02412at 2513.524 kb on + strand, within ECD_02412at 2513.525 kb on - strand, within ECD_02412at 2513.525 kb on - strand, within ECD_02412at 2513.527 kb on + strand, within ECD_02412at 2513.636 kb on - strand, within ECD_02412at 2513.636 kb on - strand, within ECD_02412at 2513.677 kb on + strand, within ECD_02412at 2513.720 kb on + strand, within ECD_02412at 2513.870 kb on - strand, within ECD_02412at 2513.870 kb on - strand, within ECD_02412at 2513.963 kb on - strand, within ECD_02412at 2513.974 kb on - strand, within ECD_02412at 2514.042 kb on + strand, within ECD_02412at 2514.043 kb on - strand, within ECD_02412at 2514.050 kb on - strand, within ECD_02412at 2514.052 kb on + strand, within ECD_02412at 2514.278 kb on + strand, within ECD_02412at 2514.278 kb on + strand, within ECD_02412at 2514.289 kb on + strand, within ECD_02412at 2514.290 kb on - strand, within ECD_02412at 2514.290 kb on - strand, within ECD_02412at 2514.293 kb on + strand, within ECD_02412at 2514.298 kb on - strand, within ECD_02412at 2514.411 kb on + strand, within ECD_02412at 2514.449 kb on - strand, within ECD_02412at 2514.547 kb on - strand, within ECD_02412at 2514.569 kb on - strand, within ECD_02412at 2514.738 kb on + strand, within ECD_02412at 2514.813 kb on + strand, within ECD_02412at 2514.814 kb on - strand, within ECD_02412at 2514.877 kb on + strand, within ECD_02412at 2514.946 kb on + strand, within ECD_02412at 2514.947 kb on - strand, within ECD_02412at 2515.127 kb on + strand, within ECD_02412at 2515.127 kb on + strand, within ECD_02412at 2515.152 kb on - strand, within ECD_02412at 2515.205 kb on - strand, within ECD_02412at 2515.205 kb on - strand, within ECD_02412at 2515.205 kb on - strand, within ECD_02412at 2515.228 kb on - strand, within ECD_02412at 2515.228 kb on - strand, within ECD_02412at 2515.228 kb on - strand, within ECD_02412at 2515.233 kb on + strand, within ECD_02412at 2515.234 kb on - strand, within ECD_02412at 2515.234 kb on - strand, within ECD_02412at 2515.234 kb on - strand, within ECD_02412at 2515.321 kb on + strand, within ECD_02412at 2515.423 kb on + strand, within ECD_02412at 2515.423 kb on + strand, within ECD_02412at 2515.423 kb on + strand, within ECD_02412at 2515.424 kb on - strand, within ECD_02412at 2515.431 kb on + strand, within ECD_02412at 2515.486 kb on + strand, within ECD_02412at 2515.713 kb on - strand, within ECD_02412at 2515.856 kb on - strand, within ECD_02412at 2515.901 kb on + strand, within ECD_02412at 2515.966 kb on - strand, within ECD_02412at 2516.189 kb on - strand, within ECD_02412at 2516.191 kb on + strand, within ECD_02412at 2516.191 kb on + strand, within ECD_02412at 2516.292 kb on - strandat 2516.391 kb on - strandat 2516.405 kb on - strandat 2516.410 kb on + strandat 2516.656 kb on + strandat 2516.735 kb on + strandat 2516.735 kb on + strandat 2516.736 kb on - strandat 2516.808 kb on - strandat 2516.828 kb on + strandat 2516.837 kb on + strandat 2516.837 kb on + strandat 2516.856 kb on + strandat 2516.857 kb on - strandat 2516.857 kb on - strandat 2516.928 kb on - strandat 2516.973 kb on + strandat 2517.098 kb on - strand, within ECD_02413at 2517.112 kb on - strand, within ECD_02413at 2517.261 kb on + strand, within ECD_02413at 2517.261 kb on + strand, within ECD_02413at 2517.386 kb on + strand, within ECD_02413at 2517.420 kb on + strand, within ECD_02413at 2517.452 kb on + strand, within ECD_02413at 2517.452 kb on + strand, within ECD_02413at 2517.452 kb on + strand, within ECD_02413at 2517.545 kb on + strand, within ECD_02413at 2517.661 kb on + strand, within ECD_02413

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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2,510,983 + ECD_02411 0.64 -1.2
2,510,984 - ECD_02411 0.64 -1.9
2,510,984 - ECD_02411 0.64 -0.4
2,510,984 - ECD_02411 0.64 -1.1
2,510,984 - ECD_02411 0.64 -1.1
2,510,984 - ECD_02411 0.64 -0.9
2,510,984 - ECD_02411 0.64 -0.8
2,511,146 - ECD_02411 0.71 -1.3
2,511,237 + ECD_02411 0.75 -1.7
2,511,268 - ECD_02411 0.77 -0.9
2,511,327 + ECD_02411 0.79 -0.7
2,511,327 + ECD_02411 0.79 -0.6
2,511,470 - ECD_02411 0.85 -2.3
2,511,559 - ECD_02411 0.89 -0.2
2,511,579 + -1.0
2,511,580 - -0.9
2,511,807 + -0.3
2,511,808 - -0.2
2,511,808 - -1.3
2,511,808 - -0.4
2,511,864 + +0.1
2,511,864 + -0.1
2,511,864 + +0.2
2,511,865 - -1.5
2,511,865 - -1.3
2,511,865 - -0.8
2,511,897 + -1.0
2,512,192 + -1.9
2,512,219 + -3.2
2,512,220 - -1.6
2,512,229 - -1.1
2,512,237 + -0.6
2,512,460 - ECD_02412 0.13 -0.1
2,512,548 + ECD_02412 0.15 -0.2
2,512,548 + ECD_02412 0.15 -0.4
2,512,618 + ECD_02412 0.16 -0.8
2,512,619 - ECD_02412 0.16 +0.1
2,512,619 - ECD_02412 0.16 -0.6
2,512,908 - ECD_02412 0.22 +0.9
2,512,912 - ECD_02412 0.22 -0.7
2,513,001 + ECD_02412 0.24 -2.4
2,513,002 - ECD_02412 0.24 +0.8
2,513,170 - ECD_02412 0.27 -0.9
2,513,240 - ECD_02412 0.29 -1.0
2,513,420 - ECD_02412 0.33 -0.2
2,513,524 + ECD_02412 0.35 -1.1
2,513,524 + ECD_02412 0.35 +1.1
2,513,525 - ECD_02412 0.35 -0.0
2,513,525 - ECD_02412 0.35 -1.0
2,513,527 + ECD_02412 0.35 +0.4
2,513,636 - ECD_02412 0.37 -0.6
2,513,636 - ECD_02412 0.37 -0.7
2,513,677 + ECD_02412 0.38 -0.7
2,513,720 + ECD_02412 0.39 -0.9
2,513,870 - ECD_02412 0.42 -1.2
2,513,870 - ECD_02412 0.42 +0.5
2,513,963 - ECD_02412 0.43 -1.0
2,513,974 - ECD_02412 0.44 -0.5
2,514,042 + ECD_02412 0.45 +0.3
2,514,043 - ECD_02412 0.45 +1.0
2,514,050 - ECD_02412 0.45 -0.7
2,514,052 + ECD_02412 0.45 -1.2
2,514,278 + ECD_02412 0.50 -1.9
2,514,278 + ECD_02412 0.50 +2.0
2,514,289 + ECD_02412 0.50 -0.4
2,514,290 - ECD_02412 0.50 -0.1
2,514,290 - ECD_02412 0.50 -1.7
2,514,293 + ECD_02412 0.50 -0.0
2,514,298 - ECD_02412 0.50 +1.1
2,514,411 + ECD_02412 0.52 -2.5
2,514,449 - ECD_02412 0.53 -2.9
2,514,547 - ECD_02412 0.55 -0.5
2,514,569 - ECD_02412 0.56 -0.9
2,514,738 + ECD_02412 0.59 -1.9
2,514,813 + ECD_02412 0.61 +1.0
2,514,814 - ECD_02412 0.61 -1.7
2,514,877 + ECD_02412 0.62 +0.6
2,514,946 + ECD_02412 0.63 -0.9
2,514,947 - ECD_02412 0.63 -2.3
2,515,127 + ECD_02412 0.67 +0.4
2,515,127 + ECD_02412 0.67 -1.4
2,515,152 - ECD_02412 0.67 -2.5
2,515,205 - ECD_02412 0.69 -2.0
2,515,205 - ECD_02412 0.69 -0.8
2,515,205 - ECD_02412 0.69 -0.6
2,515,228 - ECD_02412 0.69 +1.4
2,515,228 - ECD_02412 0.69 -2.0
2,515,228 - ECD_02412 0.69 +0.3
2,515,233 + ECD_02412 0.69 -1.8
2,515,234 - ECD_02412 0.69 -1.4
2,515,234 - ECD_02412 0.69 +0.5
2,515,234 - ECD_02412 0.69 -0.8
2,515,321 + ECD_02412 0.71 +0.5
2,515,423 + ECD_02412 0.73 -0.4
2,515,423 + ECD_02412 0.73 -1.4
2,515,423 + ECD_02412 0.73 -0.1
2,515,424 - ECD_02412 0.73 -0.5
2,515,431 + ECD_02412 0.73 -1.1
2,515,486 + ECD_02412 0.74 -3.4
2,515,713 - ECD_02412 0.79 +0.0
2,515,856 - ECD_02412 0.82 -0.7
2,515,901 + ECD_02412 0.83 -1.1
2,515,966 - ECD_02412 0.84 +0.8
2,516,189 - ECD_02412 0.88 +0.6
2,516,191 + ECD_02412 0.88 -1.5
2,516,191 + ECD_02412 0.88 -2.0
2,516,292 - +0.2
2,516,391 - -1.9
2,516,405 - +0.4
2,516,410 + -1.2
2,516,656 + +0.1
2,516,735 + -0.3
2,516,735 + +0.3
2,516,736 - -0.4
2,516,808 - -0.1
2,516,828 + -0.7
2,516,837 + -1.6
2,516,837 + -1.5
2,516,856 + -0.6
2,516,857 - +1.2
2,516,857 - +0.6
2,516,928 - +0.2
2,516,973 + +1.8
2,517,098 - ECD_02413 0.15 +1.2
2,517,112 - ECD_02413 0.16 +1.3
2,517,261 + ECD_02413 0.34 -0.4
2,517,261 + ECD_02413 0.34 +0.6
2,517,386 + ECD_02413 0.49 +0.1
2,517,420 + ECD_02413 0.53 -1.0
2,517,452 + ECD_02413 0.57 +1.0
2,517,452 + ECD_02413 0.57 +0.0
2,517,452 + ECD_02413 0.57 +0.0
2,517,545 + ECD_02413 0.67 +0.3
2,517,661 + ECD_02413 0.81 -0.5

Or see this region's nucleotide sequence