Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02376 and ECD_02377 are separated by 14 nucleotides ECD_02377 and ECD_02378 are separated by 4 nucleotides ECD_02378 and ECD_02379 overlap by 11 nucleotides
ECD_02376: ECD_02376 - hydrogenase 4, membrane subunit, at 2,469,385 to 2,470,734
_02376
ECD_02377: ECD_02377 - hydrogenase 4, membrane subunit, at 2,470,749 to 2,471,399
_02377
ECD_02378: ECD_02378 - hydrogenase 4, membrane subunit, at 2,471,404 to 2,472,984
_02378
ECD_02379: ECD_02379 - hydrogenase 4, subunit, at 2,472,974 to 2,474,641
_02379
Position (kb)
2471
2472
2473 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2470.713 kb on - strand at 2470.733 kb on - strand at 2470.735 kb on + strand at 2470.735 kb on + strand at 2470.760 kb on + strand at 2470.761 kb on - strand at 2471.144 kb on - strand, within ECD_02377 at 2471.284 kb on + strand, within ECD_02377 at 2471.284 kb on + strand, within ECD_02377 at 2471.352 kb on - strand at 2471.513 kb on + strand at 2471.514 kb on - strand at 2471.516 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.521 kb on - strand at 2471.521 kb on - strand at 2471.521 kb on - strand at 2471.680 kb on + strand, within ECD_02378 at 2471.793 kb on + strand, within ECD_02378 at 2471.802 kb on + strand, within ECD_02378 at 2471.870 kb on - strand, within ECD_02378 at 2471.905 kb on + strand, within ECD_02378 at 2471.905 kb on + strand, within ECD_02378 at 2471.913 kb on + strand, within ECD_02378 at 2471.914 kb on - strand, within ECD_02378 at 2472.053 kb on + strand, within ECD_02378 at 2472.053 kb on + strand, within ECD_02378 at 2472.220 kb on + strand, within ECD_02378 at 2472.220 kb on + strand, within ECD_02378 at 2472.221 kb on - strand, within ECD_02378 at 2472.229 kb on - strand, within ECD_02378 at 2472.229 kb on - strand, within ECD_02378 at 2472.320 kb on + strand, within ECD_02378 at 2472.333 kb on + strand, within ECD_02378 at 2472.389 kb on + strand, within ECD_02378 at 2472.390 kb on - strand, within ECD_02378 at 2472.486 kb on - strand, within ECD_02378 at 2472.496 kb on + strand, within ECD_02378 at 2472.651 kb on + strand, within ECD_02378 at 2472.651 kb on + strand, within ECD_02378 at 2472.680 kb on + strand, within ECD_02378 at 2472.714 kb on - strand, within ECD_02378 at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.882 kb on - strand at 2473.120 kb on - strand at 2473.120 kb on - strand at 2473.186 kb on + strand, within ECD_02379 at 2473.187 kb on - strand, within ECD_02379 at 2473.205 kb on + strand, within ECD_02379 at 2473.208 kb on + strand, within ECD_02379 at 2473.209 kb on - strand, within ECD_02379 at 2473.346 kb on + strand, within ECD_02379 at 2473.347 kb on - strand, within ECD_02379 at 2473.347 kb on - strand, within ECD_02379 at 2473.414 kb on + strand, within ECD_02379 at 2473.415 kb on - strand, within ECD_02379 at 2473.415 kb on - strand, within ECD_02379 at 2473.543 kb on + strand, within ECD_02379 at 2473.544 kb on - strand, within ECD_02379 at 2473.622 kb on + strand, within ECD_02379 at 2473.623 kb on - strand, within ECD_02379 at 2473.623 kb on - strand, within ECD_02379 at 2473.733 kb on + strand, within ECD_02379 at 2473.786 kb on + strand, within ECD_02379 at 2473.787 kb on - strand, within ECD_02379 at 2473.789 kb on + strand, within ECD_02379 at 2473.790 kb on - strand, within ECD_02379
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,470,713 - +0.3 2,470,733 - -0.1 2,470,735 + +0.7 2,470,735 + +0.0 2,470,760 + +1.4 2,470,761 - -0.2 2,471,144 - ECD_02377 0.61 +0.8 2,471,284 + ECD_02377 0.82 +0.0 2,471,284 + ECD_02377 0.82 +1.9 2,471,352 - +0.4 2,471,513 + -1.1 2,471,514 - -0.8 2,471,516 + -0.1 2,471,520 + +0.5 2,471,520 + -0.5 2,471,520 + -0.4 2,471,520 + -0.1 2,471,520 + -1.0 2,471,521 - -2.4 2,471,521 - +0.5 2,471,521 - -1.8 2,471,680 + ECD_02378 0.17 -0.1 2,471,793 + ECD_02378 0.25 +1.1 2,471,802 + ECD_02378 0.25 -0.1 2,471,870 - ECD_02378 0.29 -1.4 2,471,905 + ECD_02378 0.32 -0.6 2,471,905 + ECD_02378 0.32 -0.0 2,471,913 + ECD_02378 0.32 -0.4 2,471,914 - ECD_02378 0.32 +0.2 2,472,053 + ECD_02378 0.41 +0.9 2,472,053 + ECD_02378 0.41 -0.2 2,472,220 + ECD_02378 0.52 +0.1 2,472,220 + ECD_02378 0.52 +1.3 2,472,221 - ECD_02378 0.52 -2.1 2,472,229 - ECD_02378 0.52 +0.3 2,472,229 - ECD_02378 0.52 +0.3 2,472,320 + ECD_02378 0.58 +0.4 2,472,333 + ECD_02378 0.59 +0.4 2,472,389 + ECD_02378 0.62 +0.1 2,472,390 - ECD_02378 0.62 +0.3 2,472,486 - ECD_02378 0.68 +0.0 2,472,496 + ECD_02378 0.69 -0.1 2,472,651 + ECD_02378 0.79 -1.0 2,472,651 + ECD_02378 0.79 -0.7 2,472,680 + ECD_02378 0.81 +0.7 2,472,714 - ECD_02378 0.83 -0.1 2,472,881 + +0.5 2,472,881 + +0.7 2,472,881 + -1.0 2,472,881 + +0.0 2,472,881 + +0.2 2,472,881 + +0.2 2,472,882 - -1.3 2,473,120 - -0.2 2,473,120 - -1.1 2,473,186 + ECD_02379 0.13 -0.7 2,473,187 - ECD_02379 0.13 -0.2 2,473,205 + ECD_02379 0.14 -0.5 2,473,208 + ECD_02379 0.14 +0.5 2,473,209 - ECD_02379 0.14 -0.6 2,473,346 + ECD_02379 0.22 +1.3 2,473,347 - ECD_02379 0.22 -0.8 2,473,347 - ECD_02379 0.22 +0.6 2,473,414 + ECD_02379 0.26 -0.2 2,473,415 - ECD_02379 0.26 -0.1 2,473,415 - ECD_02379 0.26 +0.9 2,473,543 + ECD_02379 0.34 +1.0 2,473,544 - ECD_02379 0.34 +0.6 2,473,622 + ECD_02379 0.39 +1.9 2,473,623 - ECD_02379 0.39 -0.3 2,473,623 - ECD_02379 0.39 +1.8 2,473,733 + ECD_02379 0.46 -0.6 2,473,786 + ECD_02379 0.49 +0.4 2,473,787 - ECD_02379 0.49 +0.9 2,473,789 + ECD_02379 0.49 -1.0 2,473,790 - ECD_02379 0.49 -0.5
Or see this region's nucleotide sequence