Strain Fitness in Escherichia coli BL21 around ECD_02308

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_t00041 and ECD_t00042 are separated by 44 nucleotidesECD_t00042 and ECD_t00043 are separated by 46 nucleotidesECD_t00043 and ECD_t00044 are separated by 4 nucleotidesECD_t00044 and ECD_02307 are separated by 119 nucleotidesECD_02307 and ECD_02308 overlap by 10 nucleotidesECD_02308 and ECD_02309 are separated by 89 nucleotides ECD_t00041: ECD_t00041 - tRNA-Val, at 2,397,468 to 2,397,543 _t00041 ECD_t00042: ECD_t00042 - tRNA-Val, at 2,397,588 to 2,397,663 _t00042 ECD_t00043: ECD_t00043 - tRNA-Val, at 2,397,710 to 2,397,785 _t00043 ECD_t00044: ECD_t00044 - tRNA-Lys, at 2,397,790 to 2,397,865 _t00044 ECD_02307: ECD_02307 - hypothetical protein, at 2,397,985 to 2,398,326 _02307 ECD_02308: ECD_02308 - transcriptional regulator of yefH, at 2,398,317 to 2,399,243 _02308 ECD_02309: ECD_02309 - putative inorganic ion transporter, at 2,399,333 to 2,400,331 _02309 Position (kb) 2398 2399 2400Strain fitness (log2 ratio) -2 -1 0 1 2at 2397.319 kb on - strandat 2397.324 kb on - strandat 2397.501 kb on + strand, within ECD_t00041at 2397.546 kb on + strandat 2397.546 kb on + strandat 2397.551 kb on + strandat 2397.551 kb on + strandat 2397.551 kb on + strandat 2397.555 kb on + strandat 2397.555 kb on + strandat 2397.555 kb on + strandat 2397.555 kb on + strandat 2397.555 kb on + strandat 2397.569 kb on + strandat 2397.677 kb on + strandat 2397.743 kb on + strand, within ECD_t00043at 2397.957 kb on + strandat 2397.957 kb on + strandat 2397.965 kb on - strandat 2398.019 kb on + strandat 2398.036 kb on - strand, within ECD_02307at 2398.134 kb on + strand, within ECD_02307at 2398.318 kb on + strandat 2398.318 kb on + strandat 2398.318 kb on + strandat 2398.318 kb on + strandat 2398.321 kb on - strandat 2398.473 kb on + strand, within ECD_02308at 2398.523 kb on + strand, within ECD_02308at 2398.699 kb on + strand, within ECD_02308at 2398.700 kb on - strand, within ECD_02308at 2398.700 kb on - strand, within ECD_02308at 2398.700 kb on - strand, within ECD_02308at 2398.880 kb on + strand, within ECD_02308at 2398.881 kb on - strand, within ECD_02308at 2399.306 kb on + strandat 2399.473 kb on + strand, within ECD_02309at 2399.643 kb on - strand, within ECD_02309at 2399.957 kb on + strand, within ECD_02309at 2399.959 kb on + strand, within ECD_02309at 2400.067 kb on - strand, within ECD_02309at 2400.071 kb on - strand, within ECD_02309

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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2,397,319 - -1.5
2,397,324 - -1.2
2,397,501 + ECD_t00041 0.43 +1.5
2,397,546 + -0.9
2,397,546 + +0.5
2,397,551 + +0.6
2,397,551 + -1.8
2,397,551 + -0.5
2,397,555 + +1.3
2,397,555 + +0.3
2,397,555 + -0.3
2,397,555 + -0.3
2,397,555 + -1.2
2,397,569 + +0.1
2,397,677 + -0.6
2,397,743 + ECD_t00043 0.43 +1.3
2,397,957 + -0.6
2,397,957 + +0.6
2,397,965 - -2.0
2,398,019 + +1.5
2,398,036 - ECD_02307 0.15 +0.9
2,398,134 + ECD_02307 0.44 -1.4
2,398,318 + +0.3
2,398,318 + +1.3
2,398,318 + -2.0
2,398,318 + -0.9
2,398,321 - -0.6
2,398,473 + ECD_02308 0.17 +0.4
2,398,523 + ECD_02308 0.22 -1.0
2,398,699 + ECD_02308 0.41 +1.1
2,398,700 - ECD_02308 0.41 +0.3
2,398,700 - ECD_02308 0.41 -1.7
2,398,700 - ECD_02308 0.41 +1.0
2,398,880 + ECD_02308 0.61 +0.9
2,398,881 - ECD_02308 0.61 +0.7
2,399,306 + +1.8
2,399,473 + ECD_02309 0.14 -0.4
2,399,643 - ECD_02309 0.31 +0.5
2,399,957 + ECD_02309 0.62 +0.5
2,399,959 + ECD_02309 0.63 +0.0
2,400,067 - ECD_02309 0.73 -0.2
2,400,071 - ECD_02309 0.74 +0.7

Or see this region's nucleotide sequence