Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02213 and ECD_02214 are separated by 630 nucleotides ECD_02214 and ECD_02215 are separated by 919 nucleotides
ECD_02213: ECD_02213 - NADH:ubiquinone oxidoreductase, membrane subunit A, at 2,291,881 to 2,292,324
_02213
ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893
_02214
ECD_02215: ECD_02215 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,294,813 to 2,296,030
_02215
Position (kb)
2292
2293
2294 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2291.979 kb on - strand, within ECD_02213 at 2292.330 kb on - strand at 2292.330 kb on - strand at 2292.542 kb on + strand at 2292.584 kb on + strand at 2292.584 kb on + strand at 2292.585 kb on - strand at 2292.585 kb on - strand at 2292.851 kb on - strand at 2293.016 kb on + strand at 2293.016 kb on + strand at 2293.017 kb on - strand at 2293.017 kb on - strand at 2293.030 kb on - strand at 2293.034 kb on + strand at 2293.091 kb on + strand, within ECD_02214 at 2293.244 kb on + strand, within ECD_02214 at 2293.244 kb on + strand, within ECD_02214 at 2293.264 kb on - strand, within ECD_02214 at 2293.294 kb on - strand, within ECD_02214 at 2293.324 kb on + strand, within ECD_02214 at 2293.324 kb on + strand, within ECD_02214 at 2293.325 kb on - strand, within ECD_02214 at 2293.325 kb on - strand, within ECD_02214 at 2293.354 kb on + strand, within ECD_02214 at 2293.355 kb on - strand, within ECD_02214 at 2293.355 kb on - strand, within ECD_02214 at 2293.358 kb on + strand, within ECD_02214 at 2293.359 kb on - strand, within ECD_02214 at 2293.477 kb on - strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.485 kb on + strand, within ECD_02214 at 2293.867 kb on - strand at 2293.889 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2294.128 kb on + strand at 2294.154 kb on - strand at 2294.216 kb on - strand at 2294.749 kb on + strand at 2294.760 kb on - strand at 2294.855 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,291,979 - ECD_02213 0.22 +0.8 2,292,330 - -0.1 2,292,330 - -0.0 2,292,542 + -0.5 2,292,584 + +2.6 2,292,584 + +0.4 2,292,585 - -2.9 2,292,585 - -1.3 2,292,851 - +0.9 2,293,016 + +1.0 2,293,016 + +0.1 2,293,017 - +0.1 2,293,017 - -0.7 2,293,030 - -0.0 2,293,034 + +1.1 2,293,091 + ECD_02214 0.14 +2.1 2,293,244 + ECD_02214 0.31 +2.4 2,293,244 + ECD_02214 0.31 +2.5 2,293,264 - ECD_02214 0.33 +2.8 2,293,294 - ECD_02214 0.36 +3.3 2,293,324 + ECD_02214 0.39 +3.2 2,293,324 + ECD_02214 0.39 +2.4 2,293,325 - ECD_02214 0.39 +3.3 2,293,325 - ECD_02214 0.39 +2.6 2,293,354 + ECD_02214 0.42 +2.1 2,293,355 - ECD_02214 0.43 +2.0 2,293,355 - ECD_02214 0.43 +2.5 2,293,358 + ECD_02214 0.43 +2.0 2,293,359 - ECD_02214 0.43 +2.8 2,293,477 - ECD_02214 0.56 +1.8 2,293,478 + ECD_02214 0.56 +2.8 2,293,478 + ECD_02214 0.56 +1.0 2,293,478 + ECD_02214 0.56 +2.7 2,293,478 + ECD_02214 0.56 +2.0 2,293,479 - ECD_02214 0.56 +2.0 2,293,479 - ECD_02214 0.56 +3.0 2,293,479 - ECD_02214 0.56 +3.5 2,293,479 - ECD_02214 0.56 +2.3 2,293,485 + ECD_02214 0.56 +2.6 2,293,867 - +3.0 2,293,889 - +3.1 2,293,896 - +1.0 2,293,896 - +1.4 2,293,896 - +1.3 2,294,128 + +0.1 2,294,154 - -2.2 2,294,216 - -2.1 2,294,749 + +0.1 2,294,760 - -0.6 2,294,855 + +2.3
Or see this region's nucleotide sequence