Strain Fitness in Escherichia coli BL21 around ECD_02214

Experiment: EV116

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02213 and ECD_02214 are separated by 630 nucleotidesECD_02214 and ECD_02215 are separated by 919 nucleotides ECD_02213: ECD_02213 - NADH:ubiquinone oxidoreductase, membrane subunit A, at 2,291,881 to 2,292,324 _02213 ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893 _02214 ECD_02215: ECD_02215 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,294,813 to 2,296,030 _02215 Position (kb) 2292 2293 2294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2291.979 kb on - strand, within ECD_02213at 2292.330 kb on - strandat 2292.330 kb on - strandat 2292.542 kb on + strandat 2292.584 kb on + strandat 2292.584 kb on + strandat 2292.585 kb on - strandat 2292.585 kb on - strandat 2292.851 kb on - strandat 2293.016 kb on + strandat 2293.016 kb on + strandat 2293.017 kb on - strandat 2293.017 kb on - strandat 2293.030 kb on - strandat 2293.034 kb on + strandat 2293.091 kb on + strand, within ECD_02214at 2293.244 kb on + strand, within ECD_02214at 2293.244 kb on + strand, within ECD_02214at 2293.264 kb on - strand, within ECD_02214at 2293.294 kb on - strand, within ECD_02214at 2293.324 kb on + strand, within ECD_02214at 2293.324 kb on + strand, within ECD_02214at 2293.325 kb on - strand, within ECD_02214at 2293.325 kb on - strand, within ECD_02214at 2293.354 kb on + strand, within ECD_02214at 2293.355 kb on - strand, within ECD_02214at 2293.355 kb on - strand, within ECD_02214at 2293.358 kb on + strand, within ECD_02214at 2293.359 kb on - strand, within ECD_02214at 2293.477 kb on - strand, within ECD_02214at 2293.478 kb on + strand, within ECD_02214at 2293.478 kb on + strand, within ECD_02214at 2293.478 kb on + strand, within ECD_02214at 2293.478 kb on + strand, within ECD_02214at 2293.479 kb on - strand, within ECD_02214at 2293.479 kb on - strand, within ECD_02214at 2293.479 kb on - strand, within ECD_02214at 2293.479 kb on - strand, within ECD_02214at 2293.485 kb on + strand, within ECD_02214at 2293.867 kb on - strandat 2293.889 kb on - strandat 2293.896 kb on - strandat 2293.896 kb on - strandat 2293.896 kb on - strandat 2294.128 kb on + strandat 2294.154 kb on - strandat 2294.216 kb on - strandat 2294.749 kb on + strandat 2294.760 kb on - strandat 2294.855 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV116
remove
2,291,979 - ECD_02213 0.22 +0.8
2,292,330 - -0.1
2,292,330 - -0.0
2,292,542 + -0.5
2,292,584 + +2.6
2,292,584 + +0.4
2,292,585 - -2.9
2,292,585 - -1.3
2,292,851 - +0.9
2,293,016 + +1.0
2,293,016 + +0.1
2,293,017 - +0.1
2,293,017 - -0.7
2,293,030 - -0.0
2,293,034 + +1.1
2,293,091 + ECD_02214 0.14 +2.1
2,293,244 + ECD_02214 0.31 +2.4
2,293,244 + ECD_02214 0.31 +2.5
2,293,264 - ECD_02214 0.33 +2.8
2,293,294 - ECD_02214 0.36 +3.3
2,293,324 + ECD_02214 0.39 +3.2
2,293,324 + ECD_02214 0.39 +2.4
2,293,325 - ECD_02214 0.39 +3.3
2,293,325 - ECD_02214 0.39 +2.6
2,293,354 + ECD_02214 0.42 +2.1
2,293,355 - ECD_02214 0.43 +2.0
2,293,355 - ECD_02214 0.43 +2.5
2,293,358 + ECD_02214 0.43 +2.0
2,293,359 - ECD_02214 0.43 +2.8
2,293,477 - ECD_02214 0.56 +1.8
2,293,478 + ECD_02214 0.56 +2.8
2,293,478 + ECD_02214 0.56 +1.0
2,293,478 + ECD_02214 0.56 +2.7
2,293,478 + ECD_02214 0.56 +2.0
2,293,479 - ECD_02214 0.56 +2.0
2,293,479 - ECD_02214 0.56 +3.0
2,293,479 - ECD_02214 0.56 +3.5
2,293,479 - ECD_02214 0.56 +2.3
2,293,485 + ECD_02214 0.56 +2.6
2,293,867 - +3.0
2,293,889 - +3.1
2,293,896 - +1.0
2,293,896 - +1.4
2,293,896 - +1.3
2,294,128 + +0.1
2,294,154 - -2.2
2,294,216 - -2.1
2,294,749 + +0.1
2,294,760 - -0.6
2,294,855 + +2.3

Or see this region's nucleotide sequence