Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01806 and ECD_01807 are separated by 117 nucleotides ECD_01807 and ECD_01808 are separated by 104 nucleotides ECD_01808 and ECD_01809 are separated by 0 nucleotides ECD_01809 and ECD_01810 are separated by 394 nucleotides ECD_01810 and ECD_01811 are separated by 12 nucleotides
ECD_01806: ECD_01806 - 16S rRNA m(5)C1407 methyltransferase, SAM-dependent, at 1,865,948 to 1,867,387
_01806
ECD_01807: ECD_01807 - uncharacterized protein, at 1,867,505 to 1,867,741
_01807
ECD_01808: ECD_01808 - uncharacterized protein, at 1,867,846 to 1,868,037
_01808
ECD_01809: ECD_01809 - serine/threonine-specific protein phosphatase 1, at 1,868,038 to 1,868,694
_01809
ECD_01810: ECD_01810 - DUF2511 family protein, at 1,869,089 to 1,869,430
_01810
ECD_01811: ECD_01811 - inner membrane protein, at 1,869,443 to 1,870,315
_01811
Position (kb)
1868
1869 Strain fitness (log2 ratio)
-1
0
1 at 1868.788 kb on + strand at 1868.788 kb on + strand at 1868.821 kb on + strand at 1868.942 kb on + strand at 1869.267 kb on + strand, within ECD_01810 at 1869.268 kb on - strand, within ECD_01810 at 1869.399 kb on - strand at 1869.498 kb on - strand at 1869.580 kb on - strand, within ECD_01811 at 1869.605 kb on + strand, within ECD_01811 at 1869.608 kb on - strand, within ECD_01811
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,868,788 + -0.5 1,868,788 + -0.2 1,868,821 + -0.3 1,868,942 + +0.4 1,869,267 + ECD_01810 0.52 +0.3 1,869,268 - ECD_01810 0.52 +0.3 1,869,399 - -0.3 1,869,498 - +0.4 1,869,580 - ECD_01811 0.16 -0.8 1,869,605 + ECD_01811 0.19 +1.4 1,869,608 - ECD_01811 0.19 -0.9
Or see this region's nucleotide sequence