Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01798 and ECD_01799 are separated by 176 nucleotides ECD_01799 and ECD_01800 are separated by 45 nucleotides
ECD_01798: ECD_01798 - KDG regulon transcriptional repressor, at 1,855,033 to 1,855,824
_01798
ECD_01799: ECD_01799 - putative transporter, at 1,856,001 to 1,857,374
_01799
ECD_01800: ECD_01800 - putative endopeptidase, at 1,857,420 to 1,858,301
_01800
Position (kb)
1856
1857
1858 Strain fitness (log2 ratio)
-1
0
1
2 at 1855.104 kb on - strand at 1855.277 kb on - strand, within ECD_01798 at 1855.318 kb on - strand, within ECD_01798 at 1855.428 kb on - strand, within ECD_01798 at 1855.443 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.474 kb on - strand, within ECD_01798 at 1855.504 kb on - strand, within ECD_01798 at 1855.670 kb on - strand, within ECD_01798 at 1856.338 kb on + strand, within ECD_01799 at 1856.654 kb on + strand, within ECD_01799 at 1856.976 kb on + strand, within ECD_01799 at 1857.155 kb on + strand, within ECD_01799 at 1857.343 kb on + strand at 1857.422 kb on - strand at 1857.431 kb on - strand at 1857.510 kb on - strand, within ECD_01800 at 1857.719 kb on - strand, within ECD_01800 at 1858.007 kb on - strand, within ECD_01800 at 1858.062 kb on - strand, within ECD_01800 at 1858.126 kb on - strand, within ECD_01800 at 1858.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,855,104 - +0.4 1,855,277 - ECD_01798 0.31 -0.3 1,855,318 - ECD_01798 0.36 +1.3 1,855,428 - ECD_01798 0.50 +1.3 1,855,443 - ECD_01798 0.52 -0.6 1,855,447 - ECD_01798 0.52 +0.6 1,855,447 - ECD_01798 0.52 -1.1 1,855,447 - ECD_01798 0.52 +0.3 1,855,474 - ECD_01798 0.56 +1.6 1,855,504 - ECD_01798 0.59 +0.9 1,855,670 - ECD_01798 0.80 -0.7 1,856,338 + ECD_01799 0.25 +1.4 1,856,654 + ECD_01799 0.48 +0.1 1,856,976 + ECD_01799 0.71 +2.1 1,857,155 + ECD_01799 0.84 +0.7 1,857,343 + -0.4 1,857,422 - +0.8 1,857,431 - +1.5 1,857,510 - ECD_01800 0.10 +1.6 1,857,719 - ECD_01800 0.34 +1.2 1,858,007 - ECD_01800 0.67 +1.1 1,858,062 - ECD_01800 0.73 +0.8 1,858,126 - ECD_01800 0.80 -0.6 1,858,222 - +0.7
Or see this region's nucleotide sequence