Strain Fitness in Escherichia coli BL21 around ECD_01787

Experiment: EV116

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01786 and ECD_01787 are separated by 462 nucleotidesECD_01787 and ECD_01788 are separated by 62 nucleotidesECD_01788 and ECD_01789 are separated by 12 nucleotides ECD_01786: ECD_01786 - putative membrane protein/conserved protein, at 1,845,756 to 1,847,312 _01786 ECD_01787: ECD_01787 - fused mannose-specific PTS enzymes: IIA component/IIB component, at 1,847,775 to 1,848,746 _01787 ECD_01788: ECD_01788 - mannose-specific enzyme IIC component of PTS, at 1,848,809 to 1,849,609 _01788 ECD_01789: ECD_01789 - mannose-specific enzyme IID component of PTS, at 1,849,622 to 1,850,473 _01789 Position (kb) 1847 1848 1849Strain fitness (log2 ratio) -2 -1 0 1 2at 1846.812 kb on - strand, within ECD_01786at 1847.684 kb on + strandat 1847.760 kb on + strandat 1847.794 kb on + strandat 1847.951 kb on + strand, within ECD_01787at 1847.975 kb on + strand, within ECD_01787at 1848.433 kb on + strand, within ECD_01787at 1848.433 kb on + strand, within ECD_01787at 1848.749 kb on + strandat 1848.749 kb on + strandat 1848.844 kb on + strandat 1849.150 kb on + strand, within ECD_01788at 1849.541 kb on + strandat 1849.630 kb on + strandat 1849.729 kb on + strand, within ECD_01789at 1849.729 kb on + strand, within ECD_01789

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV116
remove
1,846,812 - ECD_01786 0.68 -0.3
1,847,684 + -0.8
1,847,760 + +0.0
1,847,794 + -0.1
1,847,951 + ECD_01787 0.18 -0.8
1,847,975 + ECD_01787 0.21 -0.2
1,848,433 + ECD_01787 0.68 -1.8
1,848,433 + ECD_01787 0.68 -1.1
1,848,749 + +1.3
1,848,749 + +0.2
1,848,844 + -0.8
1,849,150 + ECD_01788 0.43 -0.7
1,849,541 + +1.6
1,849,630 + -0.4
1,849,729 + ECD_01789 0.13 -1.8
1,849,729 + ECD_01789 0.13 +1.8

Or see this region's nucleotide sequence