Strain Fitness in Escherichia coli BL21 around ECD_01772

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01771 and ECD_01772 are separated by 31 nucleotidesECD_01772 and ECD_01773 are separated by 55 nucleotides ECD_01771: ECD_01771 - putative transporter, at 1,828,914 to 1,830,359 _01771 ECD_01772: ECD_01772 - putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster, at 1,830,391 to 1,831,515 _01772 ECD_01773: ECD_01773 - putative YeaWX dioxygenase beta subunit, reductase component, at 1,831,571 to 1,832,536 _01773 Position (kb) 1830 1831 1832Strain fitness (log2 ratio) -2 -1 0 1 2at 1830.628 kb on - strand, within ECD_01772at 1831.019 kb on - strand, within ECD_01772at 1831.108 kb on + strand, within ECD_01772at 1831.288 kb on + strand, within ECD_01772at 1831.307 kb on + strand, within ECD_01772at 1831.367 kb on + strand, within ECD_01772at 1831.596 kb on + strandat 1831.750 kb on - strand, within ECD_01773at 1831.999 kb on - strand, within ECD_01773at 1832.376 kb on + strand, within ECD_01773at 1832.482 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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1,830,628 - ECD_01772 0.21 -0.3
1,831,019 - ECD_01772 0.56 -1.6
1,831,108 + ECD_01772 0.64 -0.1
1,831,288 + ECD_01772 0.80 -0.8
1,831,307 + ECD_01772 0.81 -1.2
1,831,367 + ECD_01772 0.87 -2.1
1,831,596 + +1.4
1,831,750 - ECD_01773 0.19 +0.6
1,831,999 - ECD_01773 0.44 +0.8
1,832,376 + ECD_01773 0.83 +1.9
1,832,482 + +0.4

Or see this region's nucleotide sequence