Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01409 and ECD_01410 are separated by 114 nucleotides ECD_01410 and ECD_01411 are separated by 266 nucleotides ECD_01411 and ECD_01412 are separated by 75 nucleotides
ECD_01409: ECD_01409 - ATP-binding protein, periplasmic, function unknown, at 1,477,370 to 1,478,431
_01409
ECD_01410: ECD_01410 - L-asparagine transporter, at 1,478,546 to 1,480,045
_01410
ECD_01411: ECD_01411 - glutathione S-transferase-like protein, at 1,480,312 to 1,480,929
_01411
ECD_01412: ECD_01412 - IPR020099 family protein, at 1,481,005 to 1,481,217
_01412
Position (kb)
1478
1479
1480
1481 Strain fitness (log2 ratio)
-1
0
1
2 at 1478.161 kb on + strand, within ECD_01409 at 1478.229 kb on - strand, within ECD_01409 at 1478.658 kb on - strand at 1478.698 kb on + strand, within ECD_01410 at 1478.699 kb on - strand, within ECD_01410 at 1478.699 kb on - strand, within ECD_01410 at 1478.699 kb on - strand, within ECD_01410 at 1478.699 kb on - strand, within ECD_01410 at 1479.128 kb on - strand, within ECD_01410 at 1479.426 kb on - strand, within ECD_01410 at 1479.482 kb on - strand, within ECD_01410 at 1479.518 kb on - strand, within ECD_01410 at 1479.568 kb on + strand, within ECD_01410 at 1479.568 kb on + strand, within ECD_01410 at 1479.652 kb on - strand, within ECD_01410 at 1479.989 kb on - strand at 1480.081 kb on - strand at 1480.081 kb on - strand at 1480.081 kb on - strand at 1480.120 kb on - strand at 1480.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,478,161 + ECD_01409 0.74 +0.1 1,478,229 - ECD_01409 0.81 -1.4 1,478,658 - +0.7 1,478,698 + ECD_01410 0.10 +1.2 1,478,699 - ECD_01410 0.10 -0.9 1,478,699 - ECD_01410 0.10 +1.7 1,478,699 - ECD_01410 0.10 -0.0 1,478,699 - ECD_01410 0.10 +1.4 1,479,128 - ECD_01410 0.39 -1.2 1,479,426 - ECD_01410 0.59 +1.9 1,479,482 - ECD_01410 0.62 -0.1 1,479,518 - ECD_01410 0.65 +0.1 1,479,568 + ECD_01410 0.68 +1.8 1,479,568 + ECD_01410 0.68 +1.7 1,479,652 - ECD_01410 0.74 +0.2 1,479,989 - -1.2 1,480,081 - +0.3 1,480,081 - -1.4 1,480,081 - +1.1 1,480,120 - +0.7 1,480,226 - -0.7
Or see this region's nucleotide sequence