Strain Fitness in Escherichia coli BL21 around ECD_01410

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01409 and ECD_01410 are separated by 114 nucleotidesECD_01410 and ECD_01411 are separated by 266 nucleotidesECD_01411 and ECD_01412 are separated by 75 nucleotides ECD_01409: ECD_01409 - ATP-binding protein, periplasmic, function unknown, at 1,477,370 to 1,478,431 _01409 ECD_01410: ECD_01410 - L-asparagine transporter, at 1,478,546 to 1,480,045 _01410 ECD_01411: ECD_01411 - glutathione S-transferase-like protein, at 1,480,312 to 1,480,929 _01411 ECD_01412: ECD_01412 - IPR020099 family protein, at 1,481,005 to 1,481,217 _01412 Position (kb) 1478 1479 1480 1481Strain fitness (log2 ratio) -1 0 1 2at 1478.161 kb on + strand, within ECD_01409at 1478.229 kb on - strand, within ECD_01409at 1478.658 kb on - strandat 1478.698 kb on + strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1479.128 kb on - strand, within ECD_01410at 1479.426 kb on - strand, within ECD_01410at 1479.482 kb on - strand, within ECD_01410at 1479.518 kb on - strand, within ECD_01410at 1479.568 kb on + strand, within ECD_01410at 1479.568 kb on + strand, within ECD_01410at 1479.652 kb on - strand, within ECD_01410at 1479.989 kb on - strandat 1480.081 kb on - strandat 1480.081 kb on - strandat 1480.081 kb on - strandat 1480.120 kb on - strandat 1480.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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1,478,161 + ECD_01409 0.74 +0.1
1,478,229 - ECD_01409 0.81 -1.4
1,478,658 - +0.7
1,478,698 + ECD_01410 0.10 +1.2
1,478,699 - ECD_01410 0.10 -0.9
1,478,699 - ECD_01410 0.10 +1.7
1,478,699 - ECD_01410 0.10 -0.0
1,478,699 - ECD_01410 0.10 +1.4
1,479,128 - ECD_01410 0.39 -1.2
1,479,426 - ECD_01410 0.59 +1.9
1,479,482 - ECD_01410 0.62 -0.1
1,479,518 - ECD_01410 0.65 +0.1
1,479,568 + ECD_01410 0.68 +1.8
1,479,568 + ECD_01410 0.68 +1.7
1,479,652 - ECD_01410 0.74 +0.2
1,479,989 - -1.2
1,480,081 - +0.3
1,480,081 - -1.4
1,480,081 - +1.1
1,480,120 - +0.7
1,480,226 - -0.7

Or see this region's nucleotide sequence