Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01366 and ECD_01367 are separated by 50 nucleotides ECD_01367 and ECD_01368 are separated by 200 nucleotides ECD_01368 and ECD_01369 are separated by 271 nucleotides
ECD_01366: ECD_01366 - putative phosphatase inner membrane protein, at 1,434,196 to 1,435,488
_01366
ECD_01367: ECD_01367 - NADH-azoreductase, FMN-dependent, at 1,435,539 to 1,436,144
_01367
ECD_01368: ECD_01368 - putative ATP-dependent helicase, at 1,436,345 to 1,440,247
_01368
ECD_01369: ECD_01369 - DUF218 superfamily protein, SAM-binding, at 1,440,519 to 1,441,319
_01369
Position (kb)
1436
1437
1438
1439
1440
1441 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1435.486 kb on + strand at 1435.486 kb on + strand at 1435.512 kb on + strand at 1435.678 kb on + strand, within ECD_01367 at 1435.855 kb on + strand, within ECD_01367 at 1436.562 kb on - strand at 1436.581 kb on + strand at 1436.979 kb on - strand, within ECD_01368 at 1437.613 kb on + strand, within ECD_01368 at 1437.905 kb on - strand, within ECD_01368 at 1438.136 kb on + strand, within ECD_01368 at 1438.764 kb on + strand, within ECD_01368 at 1439.114 kb on + strand, within ECD_01368 at 1439.680 kb on + strand, within ECD_01368 at 1440.163 kb on + strand at 1440.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,435,486 + -3.0 1,435,486 + -1.1 1,435,512 + +0.7 1,435,678 + ECD_01367 0.23 +1.2 1,435,855 + ECD_01367 0.52 -0.5 1,436,562 - -0.2 1,436,581 + +2.0 1,436,979 - ECD_01368 0.16 +0.7 1,437,613 + ECD_01368 0.32 +1.4 1,437,905 - ECD_01368 0.40 +1.3 1,438,136 + ECD_01368 0.46 +1.5 1,438,764 + ECD_01368 0.62 -0.8 1,439,114 + ECD_01368 0.71 -0.3 1,439,680 + ECD_01368 0.85 +0.8 1,440,163 + -1.0 1,440,214 + -2.0
Or see this region's nucleotide sequence