Strain Fitness in Escherichia coli BL21 around ECD_01317

Experiment: EV116

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01316 and ECD_01317 are separated by 329 nucleotidesECD_01317 and ECD_01318 are separated by 20 nucleotides ECD_01316: ECD_01316 - putative DNA-binding transcriptional regulator of abgABT operon, at 1,389,909 to 1,390,817 _01316 ECD_01317: ECD_01317 - DNA endonuclease, at 1,391,147 to 1,391,710 _01317 ECD_01318: ECD_01318 - diguanylate cyclase, csgD regulator, at 1,391,731 to 1,392,963 _01318 Position (kb) 1391 1392Strain fitness (log2 ratio) -1 0 1at 1391.063 kb on + strandat 1391.084 kb on + strandat 1391.116 kb on + strandat 1391.127 kb on + strandat 1391.555 kb on + strand, within ECD_01317at 1391.555 kb on + strand, within ECD_01317at 1391.555 kb on + strand, within ECD_01317at 1391.555 kb on + strand, within ECD_01317at 1391.649 kb on + strand, within ECD_01317at 1391.653 kb on + strand, within ECD_01317at 1392.049 kb on - strand, within ECD_01318at 1392.049 kb on - strand, within ECD_01318at 1392.247 kb on - strand, within ECD_01318at 1392.250 kb on - strand, within ECD_01318at 1392.262 kb on - strand, within ECD_01318at 1392.466 kb on - strand, within ECD_01318

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV116
remove
1,391,063 + +0.5
1,391,084 + +0.9
1,391,116 + -0.0
1,391,127 + -0.1
1,391,555 + ECD_01317 0.72 -0.7
1,391,555 + ECD_01317 0.72 +1.1
1,391,555 + ECD_01317 0.72 +1.2
1,391,555 + ECD_01317 0.72 +0.4
1,391,649 + ECD_01317 0.89 -0.6
1,391,653 + ECD_01317 0.90 +0.3
1,392,049 - ECD_01318 0.26 +0.3
1,392,049 - ECD_01318 0.26 -1.0
1,392,247 - ECD_01318 0.42 +0.1
1,392,250 - ECD_01318 0.42 -0.3
1,392,262 - ECD_01318 0.43 +0.4
1,392,466 - ECD_01318 0.60 +1.2

Or see this region's nucleotide sequence