Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01257 and ECD_01258 are separated by 192 nucleotides ECD_01258 and ECD_01259 overlap by 1 nucleotides ECD_01259 and ECD_01260 are separated by 125 nucleotides ECD_01260 and ECD_01261 are separated by 268 nucleotides
ECD_01257: ECD_01257 - LPS regulatory protein; putative modulator of LpxC proteolysis, at 1,326,928 to 1,328,097
_01257
ECD_01258: ECD_01258 - orotidine-5'-phosphate decarboxylase, at 1,328,290 to 1,329,027
_01258
ECD_01259: ECD_01259 - initiation factor function partial mimic, SUI1 family, at 1,329,027 to 1,329,353
_01259
ECD_01260: ECD_01260 - osmotically and stress inducible lipoprotein, at 1,329,479 to 1,329,697
_01260
ECD_01261: ECD_01261 - global regulator of transcription; DeoR family, at 1,329,966 to 1,330,715
_01261
Position (kb) 1329
1330 Strain fitness (log2 ratio) -1
0
1
2
3 at 1328.361 kb on + strand at 1328.439 kb on + strand, within ECD_01258 at 1328.439 kb on + strand, within ECD_01258 at 1328.940 kb on + strand, within ECD_01258 at 1330.082 kb on - strand, within ECD_01261 at 1330.167 kb on - strand, within ECD_01261 at 1330.281 kb on - strand, within ECD_01261
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,328,361 + +3.7 1,328,439 + ECD_01258 0.20 -0.8 1,328,439 + ECD_01258 0.20 -1.1 1,328,940 + ECD_01258 0.88 -0.4 1,330,082 - ECD_01261 0.15 -0.3 1,330,167 - ECD_01261 0.27 +0.4 1,330,281 - ECD_01261 0.42 -1.3
Or see this region's nucleotide sequence