Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01248 and ECD_01249 are separated by 35 nucleotides ECD_01249 and ECD_01250 are separated by 379 nucleotides ECD_01250 and ECD_01251 are separated by 209 nucleotides
ECD_01248: ECD_01248 - inner membrane protein, S49 peptidase family protein, at 1,315,702 to 1,316,751
_01248
ECD_01249: ECD_01249 - DUF2498 protein YciN, at 1,316,787 to 1,317,038
_01249
ECD_01250: ECD_01250 - DNA topoisomerase I, omega subunit, at 1,317,418 to 1,320,015
_01250
ECD_01251: ECD_01251 - N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor, at 1,320,225 to 1,321,199
_01251
Position (kb) 1317
1318
1319
1320
1321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1316.639 kb on + strand, within ECD_01248 at 1316.644 kb on + strand, within ECD_01248 at 1317.040 kb on - strand at 1317.043 kb on + strand at 1317.177 kb on + strand at 1317.178 kb on - strand at 1317.404 kb on + strand at 1319.722 kb on + strand, within ECD_01250 at 1319.722 kb on + strand, within ECD_01250 at 1319.889 kb on + strand at 1320.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,316,639 + ECD_01248 0.89 -1.8 1,316,644 + ECD_01248 0.90 +2.4 1,317,040 - -1.1 1,317,043 + +0.7 1,317,177 + -0.4 1,317,178 - -1.5 1,317,404 + -0.7 1,319,722 + ECD_01250 0.89 -2.0 1,319,722 + ECD_01250 0.89 -1.3 1,319,889 + -1.4 1,320,159 + -1.1
Or see this region's nucleotide sequence