Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01077 and ECD_01078 are separated by 65 nucleotides ECD_01078 and ECD_01079 are separated by 11 nucleotides
ECD_01077: ECD_01077 - flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase, at 1,139,938 to 1,140,879
_01077
ECD_01078: ECD_01078 - flagellar hook-filament junction protein 1, at 1,140,945 to 1,142,588
_01078
ECD_01079: ECD_01079 - flagellar hook-filament junction protein, at 1,142,600 to 1,143,553
_01079
Position (kb)
1140
1141
1142
1143 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1139.957 kb on + strand at 1139.999 kb on + strand at 1140.033 kb on + strand, within ECD_01077 at 1140.145 kb on + strand, within ECD_01077 at 1140.145 kb on + strand, within ECD_01077 at 1140.147 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.354 kb on + strand, within ECD_01077 at 1140.358 kb on + strand, within ECD_01077 at 1140.358 kb on + strand, within ECD_01077 at 1140.359 kb on - strand, within ECD_01077 at 1140.529 kb on + strand, within ECD_01077 at 1140.673 kb on + strand, within ECD_01077 at 1140.850 kb on + strand at 1140.881 kb on + strand at 1140.912 kb on + strand at 1140.912 kb on + strand at 1140.959 kb on + strand at 1141.016 kb on + strand at 1141.019 kb on + strand at 1141.019 kb on + strand at 1141.031 kb on + strand at 1141.235 kb on + strand, within ECD_01078 at 1141.458 kb on + strand, within ECD_01078 at 1141.588 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.722 kb on + strand, within ECD_01078 at 1142.090 kb on + strand, within ECD_01078 at 1142.218 kb on + strand, within ECD_01078 at 1142.517 kb on + strand at 1142.576 kb on + strand at 1142.596 kb on + strand at 1142.596 kb on + strand at 1142.596 kb on + strand at 1142.783 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.839 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.114 kb on + strand, within ECD_01079 at 1143.145 kb on + strand, within ECD_01079 at 1143.289 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.387 kb on + strand, within ECD_01079 at 1143.500 kb on + strand at 1143.500 kb on + strand at 1143.502 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,139,957 + -0.8 1,139,999 + -1.3 1,140,033 + ECD_01077 0.10 +0.9 1,140,145 + ECD_01077 0.22 -0.7 1,140,145 + ECD_01077 0.22 +0.5 1,140,147 + ECD_01077 0.22 +1.0 1,140,153 + ECD_01077 0.23 +0.6 1,140,153 + ECD_01077 0.23 +0.6 1,140,153 + ECD_01077 0.23 +0.6 1,140,153 + ECD_01077 0.23 +0.8 1,140,153 + ECD_01077 0.23 -1.8 1,140,153 + ECD_01077 0.23 +1.1 1,140,153 + ECD_01077 0.23 +0.3 1,140,157 + ECD_01077 0.23 -0.0 1,140,157 + ECD_01077 0.23 +0.8 1,140,157 + ECD_01077 0.23 +1.7 1,140,354 + ECD_01077 0.44 -0.1 1,140,358 + ECD_01077 0.45 -0.5 1,140,358 + ECD_01077 0.45 +0.7 1,140,359 - ECD_01077 0.45 +2.1 1,140,529 + ECD_01077 0.63 -1.3 1,140,673 + ECD_01077 0.78 -0.1 1,140,850 + +0.1 1,140,881 + -1.2 1,140,912 + -0.0 1,140,912 + -0.9 1,140,959 + -0.9 1,141,016 + +1.0 1,141,019 + +0.1 1,141,019 + +0.7 1,141,031 + +0.7 1,141,235 + ECD_01078 0.18 +1.5 1,141,458 + ECD_01078 0.31 -1.2 1,141,588 + ECD_01078 0.39 -0.1 1,141,617 + ECD_01078 0.41 +0.6 1,141,617 + ECD_01078 0.41 +0.8 1,141,617 + ECD_01078 0.41 +0.1 1,141,617 + ECD_01078 0.41 +1.1 1,141,722 + ECD_01078 0.47 +0.0 1,142,090 + ECD_01078 0.70 +2.4 1,142,218 + ECD_01078 0.77 -0.7 1,142,517 + -0.9 1,142,576 + +0.7 1,142,596 + +0.2 1,142,596 + -1.3 1,142,596 + +0.0 1,142,783 + ECD_01079 0.19 +0.7 1,142,835 + ECD_01079 0.25 +2.0 1,142,835 + ECD_01079 0.25 +1.5 1,142,839 + ECD_01079 0.25 -1.2 1,143,056 + ECD_01079 0.48 +1.5 1,143,056 + ECD_01079 0.48 -1.6 1,143,114 + ECD_01079 0.54 -1.4 1,143,145 + ECD_01079 0.57 +0.8 1,143,289 + ECD_01079 0.72 +0.6 1,143,348 + ECD_01079 0.78 -1.9 1,143,348 + ECD_01079 0.78 -0.3 1,143,387 + ECD_01079 0.82 +1.0 1,143,500 + -0.4 1,143,500 + +0.9 1,143,502 + +0.2
Or see this region's nucleotide sequence