Strain Fitness in Escherichia coli BL21 around ECD_01078

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01077 and ECD_01078 are separated by 65 nucleotidesECD_01078 and ECD_01079 are separated by 11 nucleotides ECD_01077: ECD_01077 - flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase, at 1,139,938 to 1,140,879 _01077 ECD_01078: ECD_01078 - flagellar hook-filament junction protein 1, at 1,140,945 to 1,142,588 _01078 ECD_01079: ECD_01079 - flagellar hook-filament junction protein, at 1,142,600 to 1,143,553 _01079 Position (kb) 1140 1141 1142 1143Strain fitness (log2 ratio) -2 -1 0 1 2at 1139.957 kb on + strandat 1139.999 kb on + strandat 1140.033 kb on + strand, within ECD_01077at 1140.145 kb on + strand, within ECD_01077at 1140.145 kb on + strand, within ECD_01077at 1140.147 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.157 kb on + strand, within ECD_01077at 1140.157 kb on + strand, within ECD_01077at 1140.157 kb on + strand, within ECD_01077at 1140.354 kb on + strand, within ECD_01077at 1140.358 kb on + strand, within ECD_01077at 1140.358 kb on + strand, within ECD_01077at 1140.359 kb on - strand, within ECD_01077at 1140.529 kb on + strand, within ECD_01077at 1140.673 kb on + strand, within ECD_01077at 1140.850 kb on + strandat 1140.881 kb on + strandat 1140.912 kb on + strandat 1140.912 kb on + strandat 1140.959 kb on + strandat 1141.016 kb on + strandat 1141.019 kb on + strandat 1141.019 kb on + strandat 1141.031 kb on + strandat 1141.235 kb on + strand, within ECD_01078at 1141.458 kb on + strand, within ECD_01078at 1141.588 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.722 kb on + strand, within ECD_01078at 1142.090 kb on + strand, within ECD_01078at 1142.218 kb on + strand, within ECD_01078at 1142.517 kb on + strandat 1142.576 kb on + strandat 1142.596 kb on + strandat 1142.596 kb on + strandat 1142.596 kb on + strandat 1142.783 kb on + strand, within ECD_01079at 1142.835 kb on + strand, within ECD_01079at 1142.835 kb on + strand, within ECD_01079at 1142.839 kb on + strand, within ECD_01079at 1143.056 kb on + strand, within ECD_01079at 1143.056 kb on + strand, within ECD_01079at 1143.114 kb on + strand, within ECD_01079at 1143.145 kb on + strand, within ECD_01079at 1143.289 kb on + strand, within ECD_01079at 1143.348 kb on + strand, within ECD_01079at 1143.348 kb on + strand, within ECD_01079at 1143.387 kb on + strand, within ECD_01079at 1143.500 kb on + strandat 1143.500 kb on + strandat 1143.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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1,139,957 + -0.8
1,139,999 + -1.3
1,140,033 + ECD_01077 0.10 +0.9
1,140,145 + ECD_01077 0.22 -0.7
1,140,145 + ECD_01077 0.22 +0.5
1,140,147 + ECD_01077 0.22 +1.0
1,140,153 + ECD_01077 0.23 +0.6
1,140,153 + ECD_01077 0.23 +0.6
1,140,153 + ECD_01077 0.23 +0.6
1,140,153 + ECD_01077 0.23 +0.8
1,140,153 + ECD_01077 0.23 -1.8
1,140,153 + ECD_01077 0.23 +1.1
1,140,153 + ECD_01077 0.23 +0.3
1,140,157 + ECD_01077 0.23 -0.0
1,140,157 + ECD_01077 0.23 +0.8
1,140,157 + ECD_01077 0.23 +1.7
1,140,354 + ECD_01077 0.44 -0.1
1,140,358 + ECD_01077 0.45 -0.5
1,140,358 + ECD_01077 0.45 +0.7
1,140,359 - ECD_01077 0.45 +2.1
1,140,529 + ECD_01077 0.63 -1.3
1,140,673 + ECD_01077 0.78 -0.1
1,140,850 + +0.1
1,140,881 + -1.2
1,140,912 + -0.0
1,140,912 + -0.9
1,140,959 + -0.9
1,141,016 + +1.0
1,141,019 + +0.1
1,141,019 + +0.7
1,141,031 + +0.7
1,141,235 + ECD_01078 0.18 +1.5
1,141,458 + ECD_01078 0.31 -1.2
1,141,588 + ECD_01078 0.39 -0.1
1,141,617 + ECD_01078 0.41 +0.6
1,141,617 + ECD_01078 0.41 +0.8
1,141,617 + ECD_01078 0.41 +0.1
1,141,617 + ECD_01078 0.41 +1.1
1,141,722 + ECD_01078 0.47 +0.0
1,142,090 + ECD_01078 0.70 +2.4
1,142,218 + ECD_01078 0.77 -0.7
1,142,517 + -0.9
1,142,576 + +0.7
1,142,596 + +0.2
1,142,596 + -1.3
1,142,596 + +0.0
1,142,783 + ECD_01079 0.19 +0.7
1,142,835 + ECD_01079 0.25 +2.0
1,142,835 + ECD_01079 0.25 +1.5
1,142,839 + ECD_01079 0.25 -1.2
1,143,056 + ECD_01079 0.48 +1.5
1,143,056 + ECD_01079 0.48 -1.6
1,143,114 + ECD_01079 0.54 -1.4
1,143,145 + ECD_01079 0.57 +0.8
1,143,289 + ECD_01079 0.72 +0.6
1,143,348 + ECD_01079 0.78 -1.9
1,143,348 + ECD_01079 0.78 -0.3
1,143,387 + ECD_01079 0.82 +1.0
1,143,500 + -0.4
1,143,500 + +0.9
1,143,502 + +0.2

Or see this region's nucleotide sequence