Strain Fitness in Escherichia coli BL21 around ECD_00935

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00934 and ECD_00935 are separated by 168 nucleotidesECD_00935 and ECD_00936 are separated by 265 nucleotides ECD_00934: ECD_00934 - asparaginyl tRNA synthetase, at 992,674 to 994,074 _00934 ECD_00935: ECD_00935 - nicotinate phosphoribosyltransferase, at 994,243 to 995,445 _00935 ECD_00936: ECD_00936 - aminopeptidase N, at 995,711 to 998,323 _00936 Position (kb) 994 995 996Strain fitness (log2 ratio) -2 -1 0 1 2at 994.136 kb on - strandat 994.140 kb on - strandat 994.241 kb on + strandat 994.378 kb on - strand, within ECD_00935at 994.400 kb on - strand, within ECD_00935at 994.445 kb on - strand, within ECD_00935at 994.663 kb on - strand, within ECD_00935at 995.048 kb on - strand, within ECD_00935at 995.191 kb on - strand, within ECD_00935at 995.196 kb on - strand, within ECD_00935at 995.206 kb on - strand, within ECD_00935at 995.287 kb on - strand, within ECD_00935at 995.355 kb on - strandat 995.355 kb on - strandat 995.357 kb on + strandat 995.358 kb on - strandat 995.382 kb on + strandat 995.383 kb on - strandat 995.392 kb on - strandat 995.394 kb on - strandat 995.394 kb on - strandat 995.445 kb on + strandat 995.445 kb on + strandat 995.468 kb on - strandat 995.512 kb on + strandat 995.512 kb on + strandat 995.515 kb on - strandat 995.588 kb on - strandat 995.588 kb on - strandat 995.687 kb on + strandat 995.699 kb on + strandat 995.905 kb on + strandat 996.094 kb on + strand, within ECD_00936at 996.094 kb on + strand, within ECD_00936at 996.101 kb on + strand, within ECD_00936at 996.164 kb on + strand, within ECD_00936

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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994,136 - -1.1
994,140 - +0.3
994,241 + +0.7
994,378 - ECD_00935 0.11 -0.0
994,400 - ECD_00935 0.13 -0.5
994,445 - ECD_00935 0.17 +0.3
994,663 - ECD_00935 0.35 -2.0
995,048 - ECD_00935 0.67 -0.2
995,191 - ECD_00935 0.79 -1.2
995,196 - ECD_00935 0.79 -0.4
995,206 - ECD_00935 0.80 -1.7
995,287 - ECD_00935 0.87 -1.2
995,355 - -0.9
995,355 - -1.0
995,357 + -1.2
995,358 - -0.9
995,382 + -0.5
995,383 - -1.1
995,392 - -1.3
995,394 - -1.3
995,394 - -1.2
995,445 + +2.7
995,445 + -0.3
995,468 - -0.3
995,512 + -2.1
995,512 + +0.2
995,515 - -0.7
995,588 - +1.0
995,588 - +1.2
995,687 + +1.0
995,699 + +0.2
995,905 + -0.5
996,094 + ECD_00936 0.15 -0.4
996,094 + ECD_00936 0.15 -0.6
996,101 + ECD_00936 0.15 +1.1
996,164 + ECD_00936 0.17 +0.8

Or see this region's nucleotide sequence