Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00881 and ECD_00882 overlap by 4 nucleotides ECD_00882 and ECD_00883 are separated by 114 nucleotides
ECD_00881: ECD_00881 - putative OLD family ATP-dependent endonuclease; DUF2813 family protein, at 921,176 to 922,834
_00881
ECD_00882: ECD_00882 - DUF535 family protein, at 922,831 to 923,823
_00882
ECD_00883: ECD_00883 - macrolide transporter membrane fusion protein (MFP) component, at 923,938 to 925,053
_00883
Position (kb) 922
923
924 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 922.194 kb on + strand, within ECD_00881 at 922.480 kb on - strand, within ECD_00881 at 922.541 kb on - strand, within ECD_00881 at 922.603 kb on + strand, within ECD_00881 at 922.603 kb on + strand, within ECD_00881 at 922.604 kb on - strand, within ECD_00881 at 922.604 kb on - strand, within ECD_00881 at 922.604 kb on - strand, within ECD_00881 at 922.884 kb on - strand at 922.943 kb on - strand, within ECD_00882 at 922.943 kb on - strand, within ECD_00882 at 923.156 kb on - strand, within ECD_00882 at 923.429 kb on - strand, within ECD_00882 at 923.451 kb on + strand, within ECD_00882 at 923.451 kb on + strand, within ECD_00882 at 923.483 kb on - strand, within ECD_00882 at 923.483 kb on - strand, within ECD_00882 at 923.573 kb on - strand, within ECD_00882 at 923.573 kb on - strand, within ECD_00882 at 923.632 kb on - strand, within ECD_00882 at 923.716 kb on - strand, within ECD_00882 at 923.771 kb on - strand at 923.782 kb on - strand at 923.802 kb on + strand at 923.802 kb on + strand at 923.803 kb on - strand at 923.803 kb on - strand at 923.803 kb on - strand at 923.856 kb on + strand at 923.987 kb on + strand at 924.006 kb on + strand at 924.725 kb on + strand, within ECD_00883 at 924.763 kb on + strand, within ECD_00883 at 924.810 kb on + strand, within ECD_00883
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 922,194 + ECD_00881 0.61 +0.8 922,480 - ECD_00881 0.79 +0.9 922,541 - ECD_00881 0.82 +0.1 922,603 + ECD_00881 0.86 +0.1 922,603 + ECD_00881 0.86 +0.5 922,604 - ECD_00881 0.86 +0.9 922,604 - ECD_00881 0.86 +0.6 922,604 - ECD_00881 0.86 -0.6 922,884 - -3.1 922,943 - ECD_00882 0.11 -1.5 922,943 - ECD_00882 0.11 -3.0 923,156 - ECD_00882 0.33 -2.7 923,429 - ECD_00882 0.60 -4.2 923,451 + ECD_00882 0.62 -1.4 923,451 + ECD_00882 0.62 -1.5 923,483 - ECD_00882 0.66 -3.8 923,483 - ECD_00882 0.66 -2.5 923,573 - ECD_00882 0.75 -3.0 923,573 - ECD_00882 0.75 -1.3 923,632 - ECD_00882 0.81 -3.0 923,716 - ECD_00882 0.89 -2.6 923,771 - -3.1 923,782 - -1.1 923,802 + -1.3 923,802 + -2.0 923,803 - -2.1 923,803 - -2.6 923,803 - -3.0 923,856 + -3.2 923,987 + -0.9 924,006 + +1.6 924,725 + ECD_00883 0.71 -0.1 924,763 + ECD_00883 0.74 +1.1 924,810 + ECD_00883 0.78 +0.9
Or see this region's nucleotide sequence