Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00807 and ECD_00808 are separated by 57 nucleotides ECD_00808 and ECD_00809 are separated by 284 nucleotides ECD_00809 and ECD_00810 are separated by 40 nucleotides ECD_00810 and ECD_00811 are separated by 85 nucleotides
ECD_00807: ECD_00807 - deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx, at 865,895 to 866,653
_00807
ECD_00808: ECD_00808 - undecaprenyl pyrophosphate phosphatase, at 866,711 to 867,307
_00808
ECD_00809: ECD_00809 - multidrug efflux system protein, at 867,592 to 868,824
_00809
ECD_00810: ECD_00810 - uncharacterized protein, at 868,865 to 869,149
_00810
ECD_00811: ECD_00811 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 869,235 to 870,050
_00811
Position (kb) 867
868
869 Strain fitness (log2 ratio) -2
-1
0
1
2 at 866.594 kb on - strand at 866.671 kb on - strand at 866.691 kb on - strand at 866.691 kb on - strand at 866.691 kb on - strand at 866.789 kb on - strand, within ECD_00808 at 866.822 kb on - strand, within ECD_00808 at 866.837 kb on - strand, within ECD_00808 at 866.958 kb on - strand, within ECD_00808 at 867.364 kb on - strand at 867.376 kb on - strand at 867.401 kb on - strand at 867.473 kb on + strand at 867.474 kb on - strand at 867.493 kb on + strand at 867.679 kb on + strand at 867.679 kb on + strand at 867.679 kb on + strand at 867.680 kb on - strand at 867.680 kb on - strand at 867.708 kb on + strand at 867.708 kb on + strand at 867.756 kb on + strand, within ECD_00809 at 867.795 kb on - strand, within ECD_00809 at 867.941 kb on + strand, within ECD_00809 at 868.055 kb on + strand, within ECD_00809 at 868.186 kb on - strand, within ECD_00809 at 868.187 kb on + strand, within ECD_00809 at 868.226 kb on - strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.228 kb on - strand, within ECD_00809 at 868.354 kb on + strand, within ECD_00809 at 868.355 kb on - strand, within ECD_00809 at 868.458 kb on + strand, within ECD_00809 at 868.532 kb on + strand, within ECD_00809 at 868.533 kb on - strand, within ECD_00809 at 868.550 kb on + strand, within ECD_00809 at 868.554 kb on + strand, within ECD_00809 at 868.866 kb on + strand at 868.913 kb on + strand, within ECD_00810 at 868.913 kb on + strand, within ECD_00810 at 868.936 kb on - strand, within ECD_00810 at 868.936 kb on - strand, within ECD_00810 at 868.977 kb on + strand, within ECD_00810 at 868.978 kb on - strand, within ECD_00810 at 869.478 kb on - strand, within ECD_00811 at 869.534 kb on + strand, within ECD_00811 at 869.535 kb on - strand, within ECD_00811 at 869.610 kb on - strand, within ECD_00811 at 869.619 kb on - strand, within ECD_00811
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 866,594 - -0.6 866,671 - -0.1 866,691 - -0.4 866,691 - -0.1 866,691 - +0.1 866,789 - ECD_00808 0.13 -0.8 866,822 - ECD_00808 0.19 -2.5 866,837 - ECD_00808 0.21 -2.3 866,958 - ECD_00808 0.41 -2.6 867,364 - +2.2 867,376 - +2.6 867,401 - -0.2 867,473 + -0.4 867,474 - +1.1 867,493 + -0.8 867,679 + -0.7 867,679 + -0.0 867,679 + -1.4 867,680 - +1.6 867,680 - +0.0 867,708 + -0.1 867,708 + +0.5 867,756 + ECD_00809 0.13 +0.3 867,795 - ECD_00809 0.16 +1.8 867,941 + ECD_00809 0.28 +0.2 868,055 + ECD_00809 0.38 +0.1 868,186 - ECD_00809 0.48 +0.2 868,187 + ECD_00809 0.48 -0.1 868,226 - ECD_00809 0.51 -1.9 868,227 + ECD_00809 0.52 +0.2 868,227 + ECD_00809 0.52 +0.4 868,227 + ECD_00809 0.52 -1.5 868,227 + ECD_00809 0.52 +0.4 868,228 - ECD_00809 0.52 +1.4 868,354 + ECD_00809 0.62 +1.5 868,355 - ECD_00809 0.62 -0.4 868,458 + ECD_00809 0.70 -0.3 868,532 + ECD_00809 0.76 -0.4 868,533 - ECD_00809 0.76 +1.8 868,550 + ECD_00809 0.78 -0.7 868,554 + ECD_00809 0.78 -0.9 868,866 + +0.9 868,913 + ECD_00810 0.17 +0.6 868,913 + ECD_00810 0.17 -0.2 868,936 - ECD_00810 0.25 -0.3 868,936 - ECD_00810 0.25 +1.3 868,977 + ECD_00810 0.39 +0.2 868,978 - ECD_00810 0.40 -0.8 869,478 - ECD_00811 0.30 +0.2 869,534 + ECD_00811 0.37 -0.1 869,535 - ECD_00811 0.37 -1.1 869,610 - ECD_00811 0.46 +1.4 869,619 - ECD_00811 0.47 +0.2
Or see this region's nucleotide sequence