Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00741 and ECD_00742 are separated by 86 nucleotides ECD_00742 and ECD_00743 overlap by 4 nucleotides
ECD_00741: ECD_00741 - 7,8-diaminopelargonic acid synthase, PLP-dependent, at 791,961 to 793,250
_00741
ECD_00742: ECD_00742 - biotin synthase, at 793,337 to 794,377
_00742
ECD_00743: ECD_00743 - 8-amino-7-oxononanoate synthase, at 794,374 to 795,528
_00743
Position (kb) 793
794
795 Strain fitness (log2 ratio) -2
-1
0
1
2 at 792.339 kb on - strand, within ECD_00741 at 792.492 kb on - strand, within ECD_00741 at 792.584 kb on - strand, within ECD_00741 at 792.584 kb on - strand, within ECD_00741 at 792.809 kb on + strand, within ECD_00741 at 793.058 kb on + strand, within ECD_00741 at 793.106 kb on + strand, within ECD_00741 at 793.107 kb on - strand, within ECD_00741 at 793.107 kb on - strand, within ECD_00741 at 793.107 kb on - strand, within ECD_00741 at 793.201 kb on + strand at 793.214 kb on + strand at 793.251 kb on - strand at 793.720 kb on + strand, within ECD_00742 at 793.784 kb on + strand, within ECD_00742 at 793.785 kb on - strand, within ECD_00742 at 793.920 kb on + strand, within ECD_00742 at 794.108 kb on + strand, within ECD_00742 at 794.109 kb on - strand, within ECD_00742 at 794.167 kb on + strand, within ECD_00742 at 794.234 kb on - strand, within ECD_00742 at 794.495 kb on - strand, within ECD_00743 at 794.511 kb on + strand, within ECD_00743 at 794.518 kb on + strand, within ECD_00743 at 794.547 kb on + strand, within ECD_00743 at 794.548 kb on - strand, within ECD_00743 at 794.619 kb on + strand, within ECD_00743 at 794.619 kb on + strand, within ECD_00743 at 794.688 kb on + strand, within ECD_00743 at 794.952 kb on - strand, within ECD_00743 at 795.160 kb on - strand, within ECD_00743 at 795.163 kb on + strand, within ECD_00743 at 795.174 kb on + strand, within ECD_00743 at 795.175 kb on - strand, within ECD_00743 at 795.200 kb on + strand, within ECD_00743 at 795.200 kb on + strand, within ECD_00743 at 795.200 kb on + strand, within ECD_00743 at 795.201 kb on - strand, within ECD_00743 at 795.354 kb on + strand, within ECD_00743
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 792,339 - ECD_00741 0.29 +0.1 792,492 - ECD_00741 0.41 -1.8 792,584 - ECD_00741 0.48 +0.6 792,584 - ECD_00741 0.48 +0.4 792,809 + ECD_00741 0.66 -0.5 793,058 + ECD_00741 0.85 -0.3 793,106 + ECD_00741 0.89 -0.4 793,107 - ECD_00741 0.89 +1.8 793,107 - ECD_00741 0.89 +0.5 793,107 - ECD_00741 0.89 -0.1 793,201 + -0.6 793,214 + +0.4 793,251 - -0.6 793,720 + ECD_00742 0.37 -0.9 793,784 + ECD_00742 0.43 +0.6 793,785 - ECD_00742 0.43 +0.3 793,920 + ECD_00742 0.56 +0.9 794,108 + ECD_00742 0.74 +1.4 794,109 - ECD_00742 0.74 -1.9 794,167 + ECD_00742 0.80 -0.0 794,234 - ECD_00742 0.86 +1.5 794,495 - ECD_00743 0.10 -1.3 794,511 + ECD_00743 0.12 +0.5 794,518 + ECD_00743 0.12 -0.2 794,547 + ECD_00743 0.15 +0.7 794,548 - ECD_00743 0.15 +2.0 794,619 + ECD_00743 0.21 -1.4 794,619 + ECD_00743 0.21 +0.8 794,688 + ECD_00743 0.27 +0.9 794,952 - ECD_00743 0.50 +2.0 795,160 - ECD_00743 0.68 +0.7 795,163 + ECD_00743 0.68 -0.2 795,174 + ECD_00743 0.69 +1.3 795,175 - ECD_00743 0.69 +1.2 795,200 + ECD_00743 0.72 +0.4 795,200 + ECD_00743 0.72 -0.7 795,200 + ECD_00743 0.72 +0.9 795,201 - ECD_00743 0.72 -0.5 795,354 + ECD_00743 0.85 +0.6
Or see this region's nucleotide sequence