Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00645 and ECD_00646 are separated by 213 nucleotides ECD_00646 and ECD_00647 are separated by 40 nucleotides ECD_00647 and ECD_00648 are separated by 348 nucleotides
ECD_00645: ECD_00645 - phosphoglucomutase, at 673,432 to 675,072
_00645
ECD_00646: ECD_00646 - lipoprotein, at 675,286 to 675,780
_00646
ECD_00647: ECD_00647 - hypothetical protein, at 675,821 to 676,471
_00647
ECD_00648: ECD_00648 - putrescine/proton symporter: putrescine/ornithine antiporter, at 676,820 to 678,139
_00648
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.338 kb on + strand, within ECD_00646 at 675.338 kb on + strand, within ECD_00646 at 675.444 kb on + strand, within ECD_00646 at 675.445 kb on - strand, within ECD_00646 at 675.489 kb on - strand, within ECD_00646 at 675.541 kb on - strand, within ECD_00646 at 675.555 kb on + strand, within ECD_00646 at 675.581 kb on + strand, within ECD_00646 at 675.668 kb on - strand, within ECD_00646 at 675.668 kb on - strand, within ECD_00646 at 676.764 kb on - strand at 676.866 kb on + strand at 676.866 kb on + strand at 676.946 kb on - strand at 676.946 kb on - strand at 676.948 kb on - strand at 677.218 kb on - strand, within ECD_00648 at 677.240 kb on - strand, within ECD_00648 at 677.318 kb on - strand, within ECD_00648 at 677.387 kb on - strand, within ECD_00648 at 677.427 kb on + strand, within ECD_00648 at 677.428 kb on - strand, within ECD_00648 at 677.460 kb on - strand, within ECD_00648
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 675,338 + ECD_00646 0.11 +1.3 675,338 + ECD_00646 0.11 -0.5 675,444 + ECD_00646 0.32 +1.8 675,445 - ECD_00646 0.32 +1.4 675,489 - ECD_00646 0.41 +1.4 675,541 - ECD_00646 0.52 -0.4 675,555 + ECD_00646 0.54 -0.3 675,581 + ECD_00646 0.60 -2.0 675,668 - ECD_00646 0.77 -0.2 675,668 - ECD_00646 0.77 +1.4 676,764 - +1.2 676,866 + -0.1 676,866 + +0.6 676,946 - -0.2 676,946 - +0.6 676,948 - +0.3 677,218 - ECD_00648 0.30 +0.8 677,240 - ECD_00648 0.32 +1.1 677,318 - ECD_00648 0.38 +0.1 677,387 - ECD_00648 0.43 +0.9 677,427 + ECD_00648 0.46 +0.5 677,428 - ECD_00648 0.46 +0.5 677,460 - ECD_00648 0.48 +1.8
Or see this region's nucleotide sequence