Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00531 and ECD_00532 overlap by 11 nucleotides ECD_00532 and ECD_00533 are separated by 156 nucleotides ECD_00533 and ECD_00534 are separated by 157 nucleotides ECD_00534 and ECD_00535 are separated by 15 nucleotides
ECD_00531: ECD_00531 - copper-sensing histidine kinase in two-component regulatory system with CusR, at 552,004 to 553,452
_00531
ECD_00532: ECD_00532 - response regulator in two-component regulatory system with CusS, at 553,442 to 554,125
_00532
ECD_00533: ECD_00533 - copper/silver efflux system, outer membrane component, at 554,282 to 555,655
_00533
ECD_00534: ECD_00534 - periplasmic copper- and silver-binding protein, at 555,813 to 556,145
_00534
ECD_00535: ECD_00535 - copper/silver efflux system, membrane fusion protein, at 556,161 to 557,384
_00535
Position (kb) 554
555
556 Strain fitness (log2 ratio) -1
0
1 at 553.308 kb on + strand at 553.443 kb on + strand at 553.470 kb on + strand at 553.761 kb on - strand, within ECD_00532 at 553.834 kb on - strand, within ECD_00532 at 553.929 kb on - strand, within ECD_00532 at 554.083 kb on - strand at 554.281 kb on + strand at 554.422 kb on + strand, within ECD_00533 at 554.623 kb on + strand, within ECD_00533 at 554.666 kb on - strand, within ECD_00533 at 554.870 kb on + strand, within ECD_00533 at 555.516 kb on - strand, within ECD_00533 at 556.127 kb on + strand at 556.281 kb on - strand at 556.281 kb on - strand at 556.349 kb on + strand, within ECD_00535 at 556.349 kb on + strand, within ECD_00535 at 556.507 kb on - strand, within ECD_00535 at 556.567 kb on - strand, within ECD_00535
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 553,308 + +0.8 553,443 + +0.9 553,470 + -0.7 553,761 - ECD_00532 0.47 +0.5 553,834 - ECD_00532 0.57 -1.6 553,929 - ECD_00532 0.71 -0.8 554,083 - +0.4 554,281 + +0.1 554,422 + ECD_00533 0.10 -0.8 554,623 + ECD_00533 0.25 -0.2 554,666 - ECD_00533 0.28 -0.7 554,870 + ECD_00533 0.43 -0.3 555,516 - ECD_00533 0.90 -1.5 556,127 + +0.2 556,281 - -0.6 556,281 - -1.4 556,349 + ECD_00535 0.15 -1.4 556,349 + ECD_00535 0.15 -0.2 556,507 - ECD_00535 0.28 -0.1 556,567 - ECD_00535 0.33 -1.6
Or see this region's nucleotide sequence