Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00431 and ECD_00432 are separated by 36 nucleotides ECD_00432 and ECD_00433 are separated by 203 nucleotides ECD_00433 and ECD_00434 are separated by 137 nucleotides ECD_00434 and ECD_00435 are separated by 416 nucleotides
ECD_00431: ECD_00431 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 473,960 to 475,612
_00431
ECD_00432: ECD_00432 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase, at 475,649 to 476,128
_00432
ECD_00433: ECD_00433 - TraB family protein, at 476,332 to 477,126
_00433
ECD_00434: ECD_00434 - putative DNA-binding transcriptional regulator, at 477,264 to 477,605
_00434
ECD_00435: ECD_00435 - copper transporter, at 478,022 to 480,526
_00435
Position (kb) 476
477
478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 475.447 kb on - strand at 475.519 kb on + strand at 475.545 kb on - strand at 475.545 kb on - strand at 475.650 kb on + strand at 475.749 kb on + strand, within ECD_00432 at 475.753 kb on + strand, within ECD_00432 at 476.168 kb on + strand at 476.169 kb on - strand at 476.213 kb on + strand at 476.275 kb on - strand at 476.275 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.396 kb on + strand at 476.396 kb on + strand at 476.397 kb on - strand at 476.465 kb on + strand, within ECD_00433 at 476.485 kb on - strand, within ECD_00433 at 476.497 kb on + strand, within ECD_00433 at 476.497 kb on + strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.499 kb on + strand, within ECD_00433 at 476.499 kb on + strand, within ECD_00433 at 476.500 kb on - strand, within ECD_00433 at 476.500 kb on - strand, within ECD_00433 at 476.506 kb on - strand, within ECD_00433 at 476.670 kb on + strand, within ECD_00433 at 476.671 kb on - strand, within ECD_00433 at 476.893 kb on - strand, within ECD_00433 at 477.003 kb on + strand, within ECD_00433 at 477.051 kb on + strand at 477.127 kb on - strand at 477.146 kb on + strand at 477.146 kb on + strand at 477.147 kb on - strand at 477.199 kb on - strand at 477.209 kb on + strand at 477.257 kb on - strand at 477.455 kb on + strand, within ECD_00434 at 477.692 kb on - strand at 477.701 kb on - strand at 477.709 kb on + strand at 477.950 kb on + strand at 478.019 kb on + strand at 478.020 kb on - strand at 478.020 kb on - strand at 478.024 kb on - strand at 478.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 475,447 - +2.5 475,519 + -1.5 475,545 - -0.5 475,545 - -1.3 475,650 + +0.6 475,749 + ECD_00432 0.21 -1.4 475,753 + ECD_00432 0.22 +0.5 476,168 + -0.9 476,169 - -1.3 476,213 + +0.1 476,275 - +0.7 476,275 - +1.1 476,375 - +0.3 476,375 - +1.0 476,375 - +0.6 476,375 - -0.4 476,396 + -1.4 476,396 + -0.4 476,397 - -0.4 476,465 + ECD_00433 0.17 +0.4 476,485 - ECD_00433 0.19 +0.6 476,497 + ECD_00433 0.21 -1.6 476,497 + ECD_00433 0.21 +1.4 476,498 - ECD_00433 0.21 -1.1 476,498 - ECD_00433 0.21 -0.0 476,498 - ECD_00433 0.21 -0.3 476,498 - ECD_00433 0.21 -0.9 476,499 + ECD_00433 0.21 -0.6 476,499 + ECD_00433 0.21 -0.9 476,500 - ECD_00433 0.21 +0.6 476,500 - ECD_00433 0.21 -1.0 476,506 - ECD_00433 0.22 +0.8 476,670 + ECD_00433 0.43 -0.7 476,671 - ECD_00433 0.43 -0.1 476,893 - ECD_00433 0.71 -0.1 477,003 + ECD_00433 0.84 -1.7 477,051 + -0.4 477,127 - +1.8 477,146 + -0.5 477,146 + +0.5 477,147 - -1.3 477,199 - +0.5 477,209 + -0.0 477,257 - -0.3 477,455 + ECD_00434 0.56 +0.0 477,692 - +0.8 477,701 - -0.1 477,709 + +0.4 477,950 + -2.7 478,019 + -0.6 478,020 - -0.2 478,020 - -0.5 478,024 - +0.9 478,106 + +0.3
Or see this region's nucleotide sequence