Strain Fitness in Escherichia coli BL21 around ECD_00428

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00427 and ECD_00428 are separated by 151 nucleotidesECD_00428 and ECD_00429 are separated by 132 nucleotides ECD_00427: ECD_00427 - acetyl esterase, at 468,060 to 469,019 _00427 ECD_00428: ECD_00428 - inosine/guanosine kinase, at 469,171 to 470,475 _00428 ECD_00429: ECD_00429 - inner membrane putative NAD(P)-binding transporter, at 470,608 to 472,284 _00429 Position (kb) 469 470 471Strain fitness (log2 ratio) -2 -1 0 1 2 3at 468.333 kb on + strand, within ECD_00427at 468.334 kb on - strand, within ECD_00427at 468.334 kb on - strand, within ECD_00427at 468.337 kb on + strand, within ECD_00427at 468.350 kb on - strand, within ECD_00427at 468.350 kb on - strand, within ECD_00427at 468.554 kb on + strand, within ECD_00427at 468.554 kb on + strand, within ECD_00427at 468.554 kb on + strand, within ECD_00427at 468.555 kb on - strand, within ECD_00427at 468.671 kb on + strand, within ECD_00427at 468.672 kb on - strand, within ECD_00427at 468.735 kb on - strand, within ECD_00427at 468.832 kb on + strand, within ECD_00427at 468.832 kb on + strand, within ECD_00427at 468.832 kb on + strand, within ECD_00427at 468.832 kb on + strand, within ECD_00427at 468.890 kb on - strand, within ECD_00427at 468.892 kb on + strand, within ECD_00427at 468.892 kb on + strand, within ECD_00427at 468.893 kb on - strand, within ECD_00427at 468.893 kb on - strand, within ECD_00427at 468.893 kb on - strand, within ECD_00427at 468.984 kb on - strandat 469.050 kb on - strandat 469.151 kb on - strandat 469.205 kb on - strandat 469.214 kb on + strandat 469.306 kb on - strand, within ECD_00428at 469.399 kb on + strand, within ECD_00428at 469.409 kb on + strand, within ECD_00428at 469.452 kb on + strand, within ECD_00428at 469.474 kb on + strand, within ECD_00428at 469.543 kb on + strand, within ECD_00428at 469.543 kb on + strand, within ECD_00428at 469.543 kb on + strand, within ECD_00428at 469.563 kb on + strand, within ECD_00428at 469.563 kb on + strand, within ECD_00428at 469.563 kb on + strand, within ECD_00428at 469.563 kb on + strand, within ECD_00428at 469.563 kb on + strand, within ECD_00428at 469.587 kb on + strand, within ECD_00428at 469.591 kb on + strand, within ECD_00428at 469.592 kb on - strand, within ECD_00428at 469.595 kb on + strand, within ECD_00428at 469.595 kb on + strand, within ECD_00428at 469.595 kb on + strand, within ECD_00428at 469.629 kb on + strand, within ECD_00428at 469.656 kb on + strand, within ECD_00428at 469.656 kb on + strand, within ECD_00428at 469.657 kb on - strand, within ECD_00428at 469.657 kb on - strand, within ECD_00428at 469.753 kb on + strand, within ECD_00428at 469.825 kb on + strand, within ECD_00428at 469.832 kb on + strand, within ECD_00428at 469.832 kb on + strand, within ECD_00428at 469.857 kb on + strand, within ECD_00428at 469.858 kb on - strand, within ECD_00428at 469.858 kb on - strand, within ECD_00428at 469.858 kb on - strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.041 kb on + strand, within ECD_00428at 470.042 kb on - strand, within ECD_00428at 470.177 kb on + strand, within ECD_00428at 470.197 kb on + strand, within ECD_00428at 470.198 kb on - strand, within ECD_00428at 470.288 kb on - strand, within ECD_00428at 470.341 kb on + strand, within ECD_00428at 470.341 kb on + strand, within ECD_00428at 470.341 kb on + strand, within ECD_00428at 470.342 kb on - strand, within ECD_00428at 470.342 kb on - strand, within ECD_00428at 470.342 kb on - strand, within ECD_00428at 470.364 kb on + strandat 470.365 kb on - strandat 470.365 kb on - strandat 470.365 kb on - strandat 470.368 kb on + strandat 470.368 kb on + strandat 470.368 kb on + strandat 470.369 kb on - strandat 470.369 kb on - strandat 470.386 kb on + strandat 470.387 kb on - strandat 470.461 kb on + strandat 470.474 kb on - strandat 470.500 kb on + strandat 470.563 kb on - strandat 470.662 kb on - strandat 470.717 kb on + strandat 470.718 kb on - strandat 470.718 kb on - strandat 470.718 kb on - strandat 470.718 kb on - strandat 470.751 kb on + strandat 470.752 kb on - strandat 470.752 kb on - strandat 471.288 kb on + strand, within ECD_00429at 471.289 kb on - strand, within ECD_00429at 471.351 kb on + strand, within ECD_00429at 471.352 kb on - strand, within ECD_00429at 471.466 kb on - strand, within ECD_00429

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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468,333 + ECD_00427 0.28 -0.1
468,334 - ECD_00427 0.29 +1.4
468,334 - ECD_00427 0.29 +0.7
468,337 + ECD_00427 0.29 -0.5
468,350 - ECD_00427 0.30 +0.1
468,350 - ECD_00427 0.30 +1.1
468,554 + ECD_00427 0.51 +0.3
468,554 + ECD_00427 0.51 -0.1
468,554 + ECD_00427 0.51 -1.4
468,555 - ECD_00427 0.52 -0.5
468,671 + ECD_00427 0.64 -0.4
468,672 - ECD_00427 0.64 +0.1
468,735 - ECD_00427 0.70 +0.7
468,832 + ECD_00427 0.80 +0.9
468,832 + ECD_00427 0.80 -0.5
468,832 + ECD_00427 0.80 -0.6
468,832 + ECD_00427 0.80 +0.3
468,890 - ECD_00427 0.86 -0.5
468,892 + ECD_00427 0.87 +1.7
468,892 + ECD_00427 0.87 +0.0
468,893 - ECD_00427 0.87 +0.6
468,893 - ECD_00427 0.87 +0.6
468,893 - ECD_00427 0.87 -0.3
468,984 - -0.5
469,050 - +1.0
469,151 - +1.7
469,205 - +0.8
469,214 + +0.5
469,306 - ECD_00428 0.10 +0.3
469,399 + ECD_00428 0.17 +1.9
469,409 + ECD_00428 0.18 +0.2
469,452 + ECD_00428 0.22 +1.8
469,474 + ECD_00428 0.23 +1.2
469,543 + ECD_00428 0.29 +0.3
469,543 + ECD_00428 0.29 +0.8
469,543 + ECD_00428 0.29 +1.5
469,563 + ECD_00428 0.30 +1.1
469,563 + ECD_00428 0.30 +1.3
469,563 + ECD_00428 0.30 +2.2
469,563 + ECD_00428 0.30 +1.3
469,563 + ECD_00428 0.30 +0.4
469,587 + ECD_00428 0.32 +2.7
469,591 + ECD_00428 0.32 +1.0
469,592 - ECD_00428 0.32 +1.0
469,595 + ECD_00428 0.32 -0.3
469,595 + ECD_00428 0.32 +3.0
469,595 + ECD_00428 0.32 +1.5
469,629 + ECD_00428 0.35 +1.1
469,656 + ECD_00428 0.37 -0.4
469,656 + ECD_00428 0.37 +1.5
469,657 - ECD_00428 0.37 +1.1
469,657 - ECD_00428 0.37 +0.4
469,753 + ECD_00428 0.45 +1.2
469,825 + ECD_00428 0.50 +1.5
469,832 + ECD_00428 0.51 +0.1
469,832 + ECD_00428 0.51 -0.4
469,857 + ECD_00428 0.53 +0.4
469,858 - ECD_00428 0.53 +1.2
469,858 - ECD_00428 0.53 +0.7
469,858 - ECD_00428 0.53 +0.9
470,041 + ECD_00428 0.67 +0.0
470,041 + ECD_00428 0.67 +0.0
470,041 + ECD_00428 0.67 +1.8
470,041 + ECD_00428 0.67 -1.1
470,042 - ECD_00428 0.67 +1.8
470,177 + ECD_00428 0.77 +1.7
470,197 + ECD_00428 0.79 +1.7
470,198 - ECD_00428 0.79 +1.8
470,288 - ECD_00428 0.86 -0.3
470,341 + ECD_00428 0.90 +0.0
470,341 + ECD_00428 0.90 -1.0
470,341 + ECD_00428 0.90 +0.8
470,342 - ECD_00428 0.90 +1.5
470,342 - ECD_00428 0.90 +0.0
470,342 - ECD_00428 0.90 +1.3
470,364 + +2.3
470,365 - +0.9
470,365 - +1.3
470,365 - +1.3
470,368 + -0.6
470,368 + -1.0
470,368 + +1.9
470,369 - -0.1
470,369 - +1.2
470,386 + +1.3
470,387 - +1.7
470,461 + -0.8
470,474 - +0.9
470,500 + -0.8
470,563 - +1.5
470,662 - +0.2
470,717 + -0.7
470,718 - -0.3
470,718 - +1.2
470,718 - +0.4
470,718 - -0.0
470,751 + +0.8
470,752 - +0.9
470,752 - -0.2
471,288 + ECD_00429 0.41 -0.8
471,289 - ECD_00429 0.41 +0.3
471,351 + ECD_00429 0.44 -0.2
471,352 - ECD_00429 0.44 -2.0
471,466 - ECD_00429 0.51 +1.5

Or see this region's nucleotide sequence