Strain Fitness in Escherichia coli BL21 around ECD_00391

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00390 and ECD_00391 are separated by 155 nucleotidesECD_00391 and ECD_00392 are separated by 208 nucleotidesECD_00392 and ECD_00393 are separated by 191 nucleotides ECD_00390: ECD_00390 - putative transposase insL for insertion sequence IS186, at 426,654 to 427,766 _00390 ECD_00391: ECD_00391 - DNA-binding ATP-dependent protease La, at 427,922 to 430,276 _00391 ECD_00392: ECD_00392 - HU, DNA-binding transcriptional regulator, beta subunit, at 430,485 to 430,757 _00392 ECD_00393: ECD_00393 - periplasmic folding chaperone, has an inactive PPIase domain, at 430,949 to 432,820 _00393 Position (kb) 427 428 429 430 431Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 427.791 kb on + strandat 427.794 kb on + strandat 427.838 kb on + strandat 427.838 kb on + strandat 427.838 kb on + strandat 427.838 kb on + strandat 427.838 kb on + strandat 427.838 kb on + strandat 427.838 kb on + strandat 427.838 kb on + strandat 427.839 kb on - strandat 427.839 kb on - strandat 427.839 kb on - strandat 427.839 kb on - strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.846 kb on + strandat 427.847 kb on - strandat 427.847 kb on - strandat 427.847 kb on - strandat 427.847 kb on - strandat 427.847 kb on - strandat 427.853 kb on + strandat 427.853 kb on + strandat 427.856 kb on + strandat 427.857 kb on - strandat 427.857 kb on - strandat 427.857 kb on - strandat 427.922 kb on - strandat 428.007 kb on + strandat 428.149 kb on + strandat 428.150 kb on - strandat 428.218 kb on + strand, within ECD_00391at 428.268 kb on - strand, within ECD_00391at 428.318 kb on - strand, within ECD_00391at 428.392 kb on + strand, within ECD_00391at 428.392 kb on + strand, within ECD_00391at 428.437 kb on + strand, within ECD_00391at 428.437 kb on + strand, within ECD_00391at 428.437 kb on + strand, within ECD_00391at 428.438 kb on - strand, within ECD_00391at 428.606 kb on + strand, within ECD_00391at 428.606 kb on + strand, within ECD_00391at 428.802 kb on - strand, within ECD_00391at 428.802 kb on - strand, within ECD_00391at 428.895 kb on - strand, within ECD_00391at 428.930 kb on + strand, within ECD_00391at 429.000 kb on + strand, within ECD_00391at 429.051 kb on - strand, within ECD_00391at 429.113 kb on + strand, within ECD_00391at 429.113 kb on + strand, within ECD_00391at 429.113 kb on + strand, within ECD_00391at 429.114 kb on - strand, within ECD_00391at 429.114 kb on - strand, within ECD_00391at 429.124 kb on + strand, within ECD_00391at 429.124 kb on + strand, within ECD_00391at 429.125 kb on - strand, within ECD_00391at 429.270 kb on + strand, within ECD_00391at 429.271 kb on - strand, within ECD_00391at 429.287 kb on + strand, within ECD_00391at 429.374 kb on - strand, within ECD_00391at 429.460 kb on + strand, within ECD_00391at 429.460 kb on + strand, within ECD_00391at 429.461 kb on - strand, within ECD_00391at 429.525 kb on - strand, within ECD_00391at 429.715 kb on - strand, within ECD_00391at 429.797 kb on + strand, within ECD_00391at 429.798 kb on - strand, within ECD_00391at 429.970 kb on + strand, within ECD_00391at 429.970 kb on + strand, within ECD_00391at 429.971 kb on - strand, within ECD_00391at 429.971 kb on - strand, within ECD_00391at 430.173 kb on + strandat 430.173 kb on + strandat 430.173 kb on + strandat 430.358 kb on + strandat 430.359 kb on - strandat 430.386 kb on - strandat 430.398 kb on - strandat 430.418 kb on - strandat 430.419 kb on + strandat 430.419 kb on + strandat 430.420 kb on - strandat 430.420 kb on - strandat 430.436 kb on + strandat 430.490 kb on + strandat 430.565 kb on + strand, within ECD_00392at 430.565 kb on + strand, within ECD_00392at 430.565 kb on + strand, within ECD_00392at 430.566 kb on - strand, within ECD_00392at 430.566 kb on - strand, within ECD_00392at 430.568 kb on + strand, within ECD_00392at 430.568 kb on + strand, within ECD_00392at 430.609 kb on + strand, within ECD_00392at 430.609 kb on + strand, within ECD_00392at 430.609 kb on + strand, within ECD_00392at 430.706 kb on + strand, within ECD_00392at 430.730 kb on + strandat 430.730 kb on + strandat 430.755 kb on + strandat 430.755 kb on + strandat 430.801 kb on + strandat 430.801 kb on + strandat 430.818 kb on + strandat 430.943 kb on + strandat 431.069 kb on + strandat 431.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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427,791 + +5.2
427,794 + +5.7
427,838 + +4.8
427,838 + +5.2
427,838 + +5.2
427,838 + +5.6
427,838 + +4.1
427,838 + +5.1
427,838 + +5.1
427,838 + +5.6
427,839 - +1.4
427,839 - +0.6
427,839 - +0.4
427,839 - +1.0
427,846 + +5.8
427,846 + +5.6
427,846 + +5.8
427,846 + +5.3
427,846 + +5.3
427,846 + +6.0
427,846 + +4.9
427,846 + +5.3
427,846 + +5.1
427,846 + +5.4
427,846 + +5.3
427,847 - +1.0
427,847 - +0.5
427,847 - +1.9
427,847 - +1.6
427,847 - +2.3
427,853 + +5.2
427,853 + +5.2
427,856 + +5.0
427,857 - +2.3
427,857 - +1.7
427,857 - +1.3
427,922 - +0.2
428,007 + -1.8
428,149 + +0.2
428,150 - +0.4
428,218 + ECD_00391 0.13 -2.3
428,268 - ECD_00391 0.15 -0.2
428,318 - ECD_00391 0.17 +1.5
428,392 + ECD_00391 0.20 +0.5
428,392 + ECD_00391 0.20 +0.7
428,437 + ECD_00391 0.22 +0.6
428,437 + ECD_00391 0.22 +0.9
428,437 + ECD_00391 0.22 -0.2
428,438 - ECD_00391 0.22 +1.2
428,606 + ECD_00391 0.29 +0.3
428,606 + ECD_00391 0.29 -0.7
428,802 - ECD_00391 0.37 -1.1
428,802 - ECD_00391 0.37 -0.9
428,895 - ECD_00391 0.41 +2.8
428,930 + ECD_00391 0.43 +1.1
429,000 + ECD_00391 0.46 -0.1
429,051 - ECD_00391 0.48 -0.9
429,113 + ECD_00391 0.51 -0.9
429,113 + ECD_00391 0.51 -1.1
429,113 + ECD_00391 0.51 -1.7
429,114 - ECD_00391 0.51 +2.3
429,114 - ECD_00391 0.51 +0.8
429,124 + ECD_00391 0.51 +0.1
429,124 + ECD_00391 0.51 +1.3
429,125 - ECD_00391 0.51 +1.0
429,270 + ECD_00391 0.57 -0.1
429,271 - ECD_00391 0.57 +1.0
429,287 + ECD_00391 0.58 +1.0
429,374 - ECD_00391 0.62 +0.3
429,460 + ECD_00391 0.65 +0.0
429,460 + ECD_00391 0.65 -2.4
429,461 - ECD_00391 0.65 +0.2
429,525 - ECD_00391 0.68 +0.5
429,715 - ECD_00391 0.76 -0.2
429,797 + ECD_00391 0.80 +0.3
429,798 - ECD_00391 0.80 +1.0
429,970 + ECD_00391 0.87 +0.4
429,970 + ECD_00391 0.87 -1.3
429,971 - ECD_00391 0.87 -2.0
429,971 - ECD_00391 0.87 -0.7
430,173 + -0.9
430,173 + +0.9
430,173 + -0.9
430,358 + -2.1
430,359 - -1.2
430,386 - -1.3
430,398 - -0.9
430,418 - -2.1
430,419 + -2.5
430,419 + -3.1
430,420 - -1.5
430,420 - -2.1
430,436 + -3.3
430,490 + -2.6
430,565 + ECD_00392 0.29 -1.6
430,565 + ECD_00392 0.29 -1.3
430,565 + ECD_00392 0.29 -3.0
430,566 - ECD_00392 0.30 -0.1
430,566 - ECD_00392 0.30 -1.5
430,568 + ECD_00392 0.30 -2.8
430,568 + ECD_00392 0.30 -0.7
430,609 + ECD_00392 0.45 -4.2
430,609 + ECD_00392 0.45 -2.4
430,609 + ECD_00392 0.45 -2.4
430,706 + ECD_00392 0.81 -2.2
430,730 + -2.7
430,730 + -3.0
430,755 + -2.0
430,755 + -2.3
430,801 + -3.5
430,801 + -2.7
430,818 + -1.3
430,943 + -0.8
431,069 + +0.8
431,069 + -1.7

Or see this region's nucleotide sequence