Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00353 and ECD_00354 are separated by 55 nucleotides ECD_00354 and ECD_00355 are separated by 22 nucleotides ECD_00355 and ECD_00356 are separated by 27 nucleotides
ECD_00353: ECD_00353 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 390,413 to 391,483
_00353
ECD_00354: ECD_00354 - tRNA-guanine transglycosylase, at 391,539 to 392,666
_00354
ECD_00355: ECD_00355 - SecYEG protein translocase auxillary subunit, at 392,689 to 393,021
_00355
ECD_00356: ECD_00356 - SecYEG protein translocase auxillary subunit, at 393,049 to 394,896
_00356
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.866 kb on + strand, within ECD_00353 at 390.866 kb on + strand, within ECD_00353 at 391.186 kb on - strand, within ECD_00353 at 391.261 kb on + strand, within ECD_00353 at 391.337 kb on - strand, within ECD_00353 at 391.438 kb on + strand at 391.445 kb on + strand at 391.445 kb on + strand at 391.462 kb on + strand at 391.526 kb on + strand at 391.526 kb on + strand at 391.844 kb on + strand, within ECD_00354 at 391.974 kb on - strand, within ECD_00354 at 392.119 kb on + strand, within ECD_00354 at 392.207 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.409 kb on + strand, within ECD_00354 at 392.411 kb on + strand, within ECD_00354 at 392.411 kb on + strand, within ECD_00354 at 392.451 kb on + strand, within ECD_00354 at 392.451 kb on + strand, within ECD_00354 at 392.478 kb on + strand, within ECD_00354 at 392.478 kb on + strand, within ECD_00354 at 392.550 kb on + strand, within ECD_00354 at 392.644 kb on + strand at 392.644 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 390,866 + ECD_00353 0.42 +0.3 390,866 + ECD_00353 0.42 -2.0 391,186 - ECD_00353 0.72 -0.7 391,261 + ECD_00353 0.79 -0.1 391,337 - ECD_00353 0.86 -2.1 391,438 + +1.5 391,445 + +0.5 391,445 + +0.5 391,462 + -1.0 391,526 + -0.2 391,526 + +0.2 391,844 + ECD_00354 0.27 -1.2 391,974 - ECD_00354 0.39 +0.2 392,119 + ECD_00354 0.51 -2.5 392,207 + ECD_00354 0.59 +0.3 392,230 + ECD_00354 0.61 -0.9 392,230 + ECD_00354 0.61 -1.9 392,230 + ECD_00354 0.61 -0.2 392,409 + ECD_00354 0.77 +0.5 392,411 + ECD_00354 0.77 -1.0 392,411 + ECD_00354 0.77 -3.0 392,451 + ECD_00354 0.81 -0.8 392,451 + ECD_00354 0.81 -0.4 392,478 + ECD_00354 0.83 -1.7 392,478 + ECD_00354 0.83 +0.2 392,550 + ECD_00354 0.90 +0.1 392,644 + -3.3 392,644 + +0.2
Or see this region's nucleotide sequence