Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00351 and ECD_00352 are separated by 4 nucleotides ECD_00352 and ECD_00353 are separated by 92 nucleotides ECD_00353 and ECD_00354 are separated by 55 nucleotides
ECD_00351: ECD_00351 - maltodextrin glucosidase, at 387,917 to 389,734
_00351
ECD_00352: ECD_00352 - acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase, at 389,739 to 390,320
_00352
ECD_00353: ECD_00353 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 390,413 to 391,483
_00353
ECD_00354: ECD_00354 - tRNA-guanine transglycosylase, at 391,539 to 392,666
_00354
Position (kb) 390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 389.440 kb on + strand, within ECD_00351 at 389.459 kb on + strand, within ECD_00351 at 389.525 kb on + strand, within ECD_00351 at 389.526 kb on - strand, within ECD_00351 at 389.537 kb on - strand, within ECD_00351 at 389.733 kb on - strand at 389.740 kb on + strand at 389.945 kb on - strand, within ECD_00352 at 390.099 kb on - strand, within ECD_00352 at 390.172 kb on - strand, within ECD_00352 at 390.172 kb on - strand, within ECD_00352 at 390.172 kb on - strand, within ECD_00352 at 390.191 kb on + strand, within ECD_00352 at 390.191 kb on + strand, within ECD_00352 at 390.192 kb on - strand, within ECD_00352 at 390.192 kb on - strand, within ECD_00352 at 390.192 kb on - strand, within ECD_00352 at 390.259 kb on - strand, within ECD_00352 at 390.294 kb on + strand at 390.326 kb on - strand at 390.327 kb on + strand at 390.327 kb on + strand at 390.332 kb on + strand at 390.332 kb on + strand at 390.484 kb on + strand at 390.536 kb on - strand, within ECD_00353 at 390.866 kb on + strand, within ECD_00353 at 390.866 kb on + strand, within ECD_00353 at 391.186 kb on - strand, within ECD_00353 at 391.261 kb on + strand, within ECD_00353 at 391.337 kb on - strand, within ECD_00353 at 391.438 kb on + strand at 391.445 kb on + strand at 391.445 kb on + strand at 391.462 kb on + strand at 391.526 kb on + strand at 391.526 kb on + strand at 391.844 kb on + strand, within ECD_00354 at 391.974 kb on - strand, within ECD_00354 at 392.119 kb on + strand, within ECD_00354 at 392.207 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.409 kb on + strand, within ECD_00354 at 392.411 kb on + strand, within ECD_00354 at 392.411 kb on + strand, within ECD_00354 at 392.451 kb on + strand, within ECD_00354 at 392.451 kb on + strand, within ECD_00354 at 392.478 kb on + strand, within ECD_00354 at 392.478 kb on + strand, within ECD_00354
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 389,440 + ECD_00351 0.84 -0.8 389,459 + ECD_00351 0.85 -1.4 389,525 + ECD_00351 0.88 -0.4 389,526 - ECD_00351 0.89 +0.3 389,537 - ECD_00351 0.89 +0.5 389,733 - +0.2 389,740 + -0.9 389,945 - ECD_00352 0.35 -1.8 390,099 - ECD_00352 0.62 -0.3 390,172 - ECD_00352 0.74 -0.8 390,172 - ECD_00352 0.74 -0.8 390,172 - ECD_00352 0.74 -1.7 390,191 + ECD_00352 0.78 -0.4 390,191 + ECD_00352 0.78 -1.2 390,192 - ECD_00352 0.78 -0.5 390,192 - ECD_00352 0.78 -0.8 390,192 - ECD_00352 0.78 +1.3 390,259 - ECD_00352 0.89 -0.6 390,294 + -0.1 390,326 - -0.1 390,327 + -1.7 390,327 + +0.3 390,332 + -1.4 390,332 + -0.2 390,484 + -2.3 390,536 - ECD_00353 0.11 -2.2 390,866 + ECD_00353 0.42 +0.3 390,866 + ECD_00353 0.42 -2.0 391,186 - ECD_00353 0.72 -0.7 391,261 + ECD_00353 0.79 -0.1 391,337 - ECD_00353 0.86 -2.1 391,438 + +1.5 391,445 + +0.5 391,445 + +0.5 391,462 + -1.0 391,526 + -0.2 391,526 + +0.2 391,844 + ECD_00354 0.27 -1.2 391,974 - ECD_00354 0.39 +0.2 392,119 + ECD_00354 0.51 -2.5 392,207 + ECD_00354 0.59 +0.3 392,230 + ECD_00354 0.61 -0.9 392,230 + ECD_00354 0.61 -1.9 392,230 + ECD_00354 0.61 -0.2 392,409 + ECD_00354 0.77 +0.5 392,411 + ECD_00354 0.77 -1.0 392,411 + ECD_00354 0.77 -3.0 392,451 + ECD_00354 0.81 -0.8 392,451 + ECD_00354 0.81 -0.4 392,478 + ECD_00354 0.83 -1.7 392,478 + ECD_00354 0.83 +0.2
Or see this region's nucleotide sequence