Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00218 and ECD_00219 overlap by 30 nucleotides ECD_00219 and ECD_00220 are separated by 155 nucleotides ECD_00220 and ECD_00221 are separated by 2 nucleotides ECD_00221 and ECD_00222 are separated by 209 nucleotides
ECD_00218: ECD_00218 - type 2 glutamine amidotransferase family protein, at 248,901 to 249,668
_00218
ECD_00219: ECD_00219 - L,D-transpeptidase-related protein, at 249,639 to 250,379
_00219
ECD_00220: ECD_00220 - mRNA interferase toxin of toxin-antitoxin pair YafQ/DinJ, at 250,535 to 250,813
_00220
ECD_00221: ECD_00221 - antitoxin of YafQ-DinJ toxin-antitoxin system, at 250,816 to 251,076
_00221
ECD_00222: ECD_00222 - putative lipoprotein and C40 family peptidase, at 251,286 to 252,035
_00222
Position (kb) 250
251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 249.661 kb on + strand at 249.662 kb on - strand at 249.719 kb on - strand, within ECD_00219 at 249.753 kb on - strand, within ECD_00219 at 249.817 kb on + strand, within ECD_00219 at 249.818 kb on - strand, within ECD_00219 at 249.863 kb on + strand, within ECD_00219 at 249.863 kb on + strand, within ECD_00219 at 249.989 kb on - strand, within ECD_00219 at 250.019 kb on - strand, within ECD_00219 at 250.019 kb on - strand, within ECD_00219 at 250.038 kb on - strand, within ECD_00219 at 250.041 kb on - strand, within ECD_00219 at 250.051 kb on + strand, within ECD_00219 at 250.052 kb on - strand, within ECD_00219 at 250.208 kb on - strand, within ECD_00219 at 250.208 kb on - strand, within ECD_00219 at 250.221 kb on - strand, within ECD_00219 at 250.221 kb on - strand, within ECD_00219 at 250.274 kb on + strand, within ECD_00219 at 250.274 kb on + strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.275 kb on - strand, within ECD_00219 at 250.304 kb on + strand, within ECD_00219 at 250.305 kb on - strand, within ECD_00219 at 250.305 kb on - strand, within ECD_00219 at 250.363 kb on - strand at 250.386 kb on + strand at 250.387 kb on - strand at 250.470 kb on - strand at 250.599 kb on + strand, within ECD_00220 at 251.097 kb on - strand at 251.097 kb on - strand at 251.221 kb on + strand at 251.378 kb on + strand, within ECD_00222 at 251.379 kb on - strand, within ECD_00222 at 251.379 kb on - strand, within ECD_00222 at 251.432 kb on - strand, within ECD_00222 at 251.469 kb on + strand, within ECD_00222 at 251.469 kb on + strand, within ECD_00222 at 251.469 kb on + strand, within ECD_00222 at 251.470 kb on - strand, within ECD_00222 at 251.470 kb on - strand, within ECD_00222 at 251.633 kb on + strand, within ECD_00222 at 251.686 kb on - strand, within ECD_00222 at 251.748 kb on + strand, within ECD_00222 at 251.749 kb on - strand, within ECD_00222 at 251.781 kb on - strand, within ECD_00222 at 251.796 kb on + strand, within ECD_00222 at 251.796 kb on + strand, within ECD_00222 at 251.796 kb on + strand, within ECD_00222 at 251.796 kb on + strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222 at 251.797 kb on - strand, within ECD_00222
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 249,661 + +1.1 249,662 - +1.1 249,719 - ECD_00219 0.11 +3.4 249,753 - ECD_00219 0.15 -0.8 249,817 + ECD_00219 0.24 -0.1 249,818 - ECD_00219 0.24 +1.3 249,863 + ECD_00219 0.30 +0.8 249,863 + ECD_00219 0.30 +1.2 249,989 - ECD_00219 0.47 -0.4 250,019 - ECD_00219 0.51 -1.2 250,019 - ECD_00219 0.51 +1.0 250,038 - ECD_00219 0.54 +0.0 250,041 - ECD_00219 0.54 +0.9 250,051 + ECD_00219 0.56 +1.2 250,052 - ECD_00219 0.56 +1.6 250,208 - ECD_00219 0.77 +0.2 250,208 - ECD_00219 0.77 +0.4 250,221 - ECD_00219 0.79 +0.2 250,221 - ECD_00219 0.79 +0.9 250,274 + ECD_00219 0.86 +1.1 250,274 + ECD_00219 0.86 +1.0 250,275 - ECD_00219 0.86 -0.4 250,275 - ECD_00219 0.86 -1.4 250,275 - ECD_00219 0.86 +0.0 250,275 - ECD_00219 0.86 +0.4 250,275 - ECD_00219 0.86 +0.7 250,304 + ECD_00219 0.90 +1.7 250,305 - ECD_00219 0.90 +1.3 250,305 - ECD_00219 0.90 +0.2 250,363 - +0.5 250,386 + +0.9 250,387 - +0.1 250,470 - +0.1 250,599 + ECD_00220 0.23 -0.1 251,097 - +0.0 251,097 - -1.0 251,221 + -1.4 251,378 + ECD_00222 0.12 -0.9 251,379 - ECD_00222 0.12 +0.7 251,379 - ECD_00222 0.12 +0.2 251,432 - ECD_00222 0.19 +0.5 251,469 + ECD_00222 0.24 +1.0 251,469 + ECD_00222 0.24 -0.3 251,469 + ECD_00222 0.24 +0.9 251,470 - ECD_00222 0.25 +0.8 251,470 - ECD_00222 0.25 +1.0 251,633 + ECD_00222 0.46 +0.1 251,686 - ECD_00222 0.53 +0.2 251,748 + ECD_00222 0.62 -1.4 251,749 - ECD_00222 0.62 +0.0 251,781 - ECD_00222 0.66 -0.4 251,796 + ECD_00222 0.68 -0.6 251,796 + ECD_00222 0.68 +0.4 251,796 + ECD_00222 0.68 +0.1 251,796 + ECD_00222 0.68 -2.3 251,797 - ECD_00222 0.68 +0.3 251,797 - ECD_00222 0.68 +1.0 251,797 - ECD_00222 0.68 -0.8 251,797 - ECD_00222 0.68 -0.3 251,797 - ECD_00222 0.68 +0.1 251,797 - ECD_00222 0.68 +0.6 251,797 - ECD_00222 0.68 +0.7 251,797 - ECD_00222 0.68 -1.3
Or see this region's nucleotide sequence