Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04262 and ECD_04263 are separated by 27 nucleotides ECD_04263 and ECD_04264 are separated by 105 nucleotides
ECD_04262: ECD_04262 - lipoate-protein ligase A, at 4,540,456 to 4,541,472
_04262
ECD_04263: ECD_04263 - SMP_2 family putative membrane-anchored periplasmic protein, at 4,541,500 to 4,542,144
_04263
ECD_04264: ECD_04264 - 3-phosphoserine phosphatase, at 4,542,250 to 4,543,218
_04264
Position (kb) 4541
4542
4543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4540.648 kb on - strand, within ECD_04262 at 4540.839 kb on - strand, within ECD_04262 at 4540.939 kb on - strand, within ECD_04262 at 4540.939 kb on - strand, within ECD_04262 at 4540.979 kb on + strand, within ECD_04262 at 4541.182 kb on - strand, within ECD_04262 at 4541.187 kb on - strand, within ECD_04262 at 4541.206 kb on - strand, within ECD_04262 at 4541.211 kb on + strand, within ECD_04262 at 4541.280 kb on + strand, within ECD_04262 at 4541.304 kb on + strand, within ECD_04262 at 4541.304 kb on + strand, within ECD_04262 at 4541.304 kb on + strand, within ECD_04262 at 4541.305 kb on - strand, within ECD_04262 at 4541.305 kb on - strand, within ECD_04262 at 4541.305 kb on - strand, within ECD_04262 at 4541.305 kb on - strand, within ECD_04262 at 4541.403 kb on + strand at 4541.439 kb on - strand at 4541.439 kb on - strand at 4541.472 kb on + strand at 4541.490 kb on + strand at 4541.493 kb on + strand at 4541.587 kb on - strand, within ECD_04263 at 4541.587 kb on - strand, within ECD_04263 at 4541.651 kb on - strand, within ECD_04263 at 4541.772 kb on + strand, within ECD_04263 at 4541.868 kb on - strand, within ECD_04263 at 4541.977 kb on + strand, within ECD_04263 at 4541.977 kb on + strand, within ECD_04263 at 4541.978 kb on - strand, within ECD_04263 at 4542.021 kb on + strand, within ECD_04263 at 4542.171 kb on + strand at 4542.172 kb on - strand at 4542.172 kb on - strand at 4542.172 kb on - strand at 4542.172 kb on - strand at 4542.172 kb on - strand at 4542.172 kb on - strand at 4542.172 kb on - strand at 4542.192 kb on + strand at 4542.193 kb on + strand at 4542.194 kb on - strand at 4542.248 kb on + strand at 4542.256 kb on - strand at 4542.256 kb on - strand at 4542.261 kb on + strand at 4542.293 kb on + strand at 4542.317 kb on + strand at 4542.412 kb on + strand, within ECD_04264 at 4542.627 kb on + strand, within ECD_04264 at 4542.627 kb on + strand, within ECD_04264 at 4542.627 kb on + strand, within ECD_04264 at 4542.711 kb on + strand, within ECD_04264 at 4542.870 kb on + strand, within ECD_04264 at 4542.871 kb on - strand, within ECD_04264 at 4542.886 kb on + strand, within ECD_04264 at 4542.887 kb on - strand, within ECD_04264 at 4542.991 kb on + strand, within ECD_04264 at 4542.991 kb on + strand, within ECD_04264
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 4,540,648 - ECD_04262 0.19 +0.7 4,540,839 - ECD_04262 0.38 +0.1 4,540,939 - ECD_04262 0.47 +0.2 4,540,939 - ECD_04262 0.47 -0.6 4,540,979 + ECD_04262 0.51 +0.6 4,541,182 - ECD_04262 0.71 -1.3 4,541,187 - ECD_04262 0.72 -0.3 4,541,206 - ECD_04262 0.74 +0.7 4,541,211 + ECD_04262 0.74 +0.5 4,541,280 + ECD_04262 0.81 +1.2 4,541,304 + ECD_04262 0.83 -0.4 4,541,304 + ECD_04262 0.83 +0.7 4,541,304 + ECD_04262 0.83 -0.5 4,541,305 - ECD_04262 0.83 +0.5 4,541,305 - ECD_04262 0.83 +0.1 4,541,305 - ECD_04262 0.83 +0.2 4,541,305 - ECD_04262 0.83 +1.1 4,541,403 + +0.7 4,541,439 - -0.9 4,541,439 - +0.2 4,541,472 + +0.3 4,541,490 + -0.2 4,541,493 + +0.2 4,541,587 - ECD_04263 0.13 -0.0 4,541,587 - ECD_04263 0.13 +1.2 4,541,651 - ECD_04263 0.23 +0.2 4,541,772 + ECD_04263 0.42 +0.1 4,541,868 - ECD_04263 0.57 -0.5 4,541,977 + ECD_04263 0.74 +0.9 4,541,977 + ECD_04263 0.74 +0.5 4,541,978 - ECD_04263 0.74 +0.2 4,542,021 + ECD_04263 0.81 +0.1 4,542,171 + -1.0 4,542,172 - +1.0 4,542,172 - +0.9 4,542,172 - +0.0 4,542,172 - -0.3 4,542,172 - -0.0 4,542,172 - -0.4 4,542,172 - -0.2 4,542,192 + -0.7 4,542,193 + -0.6 4,542,194 - -0.6 4,542,248 + -2.3 4,542,256 - -0.0 4,542,256 - +0.3 4,542,261 + +0.3 4,542,293 + +0.5 4,542,317 + +0.5 4,542,412 + ECD_04264 0.17 +0.7 4,542,627 + ECD_04264 0.39 -1.5 4,542,627 + ECD_04264 0.39 +0.7 4,542,627 + ECD_04264 0.39 +0.2 4,542,711 + ECD_04264 0.48 +0.5 4,542,870 + ECD_04264 0.64 +0.5 4,542,871 - ECD_04264 0.64 +0.6 4,542,886 + ECD_04264 0.66 +1.9 4,542,887 - ECD_04264 0.66 +0.7 4,542,991 + ECD_04264 0.76 +0.3 4,542,991 + ECD_04264 0.76 -0.4
Or see this region's nucleotide sequence