Strain Fitness in Escherichia coli BL21 around ECD_03541

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03540 and ECD_03541 are separated by 258 nucleotidesECD_03541 and ECD_03542 are separated by 381 nucleotides ECD_03540: ECD_03540 - hypothetical protein, at 3,723,685 to 3,724,530 _03540 ECD_03541: ECD_03541 - hypothetical protein, at 3,724,789 to 3,724,938 _03541 ECD_03542: ECD_03542 - putative arabinose efflux transporter, at 3,725,320 to 3,726,504 _03542 Position (kb) 3724 3725Strain fitness (log2 ratio) -1 0 1at 3723.834 kb on - strand, within ECD_03540at 3724.026 kb on + strand, within ECD_03540at 3724.026 kb on + strand, within ECD_03540at 3724.026 kb on + strand, within ECD_03540at 3724.049 kb on - strand, within ECD_03540at 3724.049 kb on - strand, within ECD_03540at 3724.143 kb on + strand, within ECD_03540at 3724.143 kb on + strand, within ECD_03540at 3724.143 kb on + strand, within ECD_03540at 3724.144 kb on - strand, within ECD_03540at 3724.351 kb on - strand, within ECD_03540at 3724.396 kb on + strand, within ECD_03540at 3724.396 kb on + strand, within ECD_03540at 3724.397 kb on - strand, within ECD_03540at 3724.397 kb on - strand, within ECD_03540at 3724.397 kb on - strand, within ECD_03540at 3724.397 kb on - strand, within ECD_03540at 3724.423 kb on + strand, within ECD_03540at 3724.423 kb on + strand, within ECD_03540at 3724.424 kb on - strand, within ECD_03540at 3724.424 kb on - strand, within ECD_03540at 3724.429 kb on - strand, within ECD_03540at 3724.429 kb on - strand, within ECD_03540at 3724.489 kb on - strandat 3724.491 kb on + strandat 3724.492 kb on - strandat 3724.493 kb on + strandat 3724.494 kb on - strandat 3724.529 kb on - strandat 3724.537 kb on - strandat 3724.552 kb on + strandat 3724.553 kb on - strandat 3724.557 kb on - strandat 3724.716 kb on + strandat 3724.716 kb on + strandat 3724.716 kb on + strandat 3724.717 kb on - strandat 3724.717 kb on - strandat 3724.717 kb on - strandat 3724.717 kb on - strandat 3724.735 kb on - strandat 3724.771 kb on + strandat 3724.880 kb on - strand, within ECD_03541at 3724.880 kb on - strand, within ECD_03541at 3725.430 kb on - strandat 3725.430 kb on - strandat 3725.433 kb on + strandat 3725.576 kb on + strand, within ECD_03542at 3725.827 kb on - strand, within ECD_03542at 3725.843 kb on - strand, within ECD_03542at 3725.883 kb on - strand, within ECD_03542

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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3,723,834 - ECD_03540 0.18 +0.4
3,724,026 + ECD_03540 0.40 +1.1
3,724,026 + ECD_03540 0.40 +0.4
3,724,026 + ECD_03540 0.40 +0.4
3,724,049 - ECD_03540 0.43 +0.3
3,724,049 - ECD_03540 0.43 -0.8
3,724,143 + ECD_03540 0.54 +0.6
3,724,143 + ECD_03540 0.54 -0.7
3,724,143 + ECD_03540 0.54 -0.4
3,724,144 - ECD_03540 0.54 -1.5
3,724,351 - ECD_03540 0.79 -1.3
3,724,396 + ECD_03540 0.84 -0.3
3,724,396 + ECD_03540 0.84 +0.5
3,724,397 - ECD_03540 0.84 -0.2
3,724,397 - ECD_03540 0.84 -0.1
3,724,397 - ECD_03540 0.84 -1.0
3,724,397 - ECD_03540 0.84 +0.0
3,724,423 + ECD_03540 0.87 +0.6
3,724,423 + ECD_03540 0.87 -0.1
3,724,424 - ECD_03540 0.87 +0.1
3,724,424 - ECD_03540 0.87 -0.1
3,724,429 - ECD_03540 0.88 +0.5
3,724,429 - ECD_03540 0.88 +0.0
3,724,489 - +0.3
3,724,491 + +0.0
3,724,492 - +0.7
3,724,493 + -0.4
3,724,494 - +0.4
3,724,529 - +0.3
3,724,537 - +0.2
3,724,552 + -0.3
3,724,553 - -0.2
3,724,557 - +0.5
3,724,716 + -0.2
3,724,716 + -0.3
3,724,716 + -0.3
3,724,717 - +0.3
3,724,717 - +1.2
3,724,717 - +0.2
3,724,717 - +0.7
3,724,735 - +0.5
3,724,771 + +0.6
3,724,880 - ECD_03541 0.61 -0.6
3,724,880 - ECD_03541 0.61 -0.5
3,725,430 - -0.4
3,725,430 - -0.2
3,725,433 + +0.4
3,725,576 + ECD_03542 0.22 +0.4
3,725,827 - ECD_03542 0.43 +1.1
3,725,843 - ECD_03542 0.44 -0.8
3,725,883 - ECD_03542 0.48 -0.1

Or see this region's nucleotide sequence