Strain Fitness in Escherichia coli BL21 around ECD_00995

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00992 and ECD_00993 are separated by 173 nucleotidesECD_00993 and ECD_00994 overlap by 11 nucleotidesECD_00994 and ECD_00995 are separated by 47 nucleotidesECD_00995 and ECD_00996 are separated by 71 nucleotides ECD_00992: ECD_00992 - cold shock protein-like protein, cold-inducible, at 1,055,750 to 1,055,962 _00992 ECD_00993: ECD_00993 - cold shock gene, at 1,056,136 to 1,056,366 _00993 ECD_00994: ECD_00994 - putative phosphatidylethanolamine synthesis regulator, at 1,056,356 to 1,056,529 _00994 ECD_00995: ECD_00995 - putative 4Fe-4S membrane protein, at 1,056,577 to 1,057,650 _00995 ECD_00996: ECD_00996 - hybrid sensory histidine kinase in two-component regulatory system with TorR, at 1,057,722 to 1,060,466 _00996 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -1 0 1at 1055.617 kb on + strandat 1055.960 kb on + strandat 1055.961 kb on - strandat 1055.972 kb on + strandat 1056.026 kb on + strandat 1056.026 kb on + strandat 1056.068 kb on + strandat 1056.124 kb on + strandat 1056.223 kb on - strand, within ECD_00993at 1056.503 kb on + strand, within ECD_00994at 1056.816 kb on + strand, within ECD_00995at 1057.054 kb on - strand, within ECD_00995at 1057.384 kb on + strand, within ECD_00995at 1057.485 kb on - strand, within ECD_00995at 1057.485 kb on - strand, within ECD_00995at 1057.522 kb on - strand, within ECD_00995at 1057.541 kb on - strand, within ECD_00995at 1057.836 kb on + strandat 1058.409 kb on + strand, within ECD_00996at 1058.574 kb on - strand, within ECD_00996

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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1,055,617 + -0.1
1,055,960 + -0.6
1,055,961 - -0.7
1,055,972 + +0.1
1,056,026 + +0.1
1,056,026 + +0.3
1,056,068 + -0.2
1,056,124 + +0.8
1,056,223 - ECD_00993 0.38 -0.1
1,056,503 + ECD_00994 0.84 +0.1
1,056,816 + ECD_00995 0.22 -0.8
1,057,054 - ECD_00995 0.44 -0.9
1,057,384 + ECD_00995 0.75 -0.1
1,057,485 - ECD_00995 0.85 -0.3
1,057,485 - ECD_00995 0.85 -0.3
1,057,522 - ECD_00995 0.88 +0.0
1,057,541 - ECD_00995 0.90 -0.5
1,057,836 + -1.6
1,058,409 + ECD_00996 0.25 -0.6
1,058,574 - ECD_00996 0.31 -1.0

Or see this region's nucleotide sequence