Strain Fitness in Escherichia coli BL21 around ECD_04195

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04194 and ECD_04195 are separated by 672 nucleotidesECD_04195 and ECD_04196 overlap by 8 nucleotidesECD_04196 and ECD_04197 are separated by 64 nucleotides ECD_04194: ECD_04194 - uncharacterized protein, at 4,464,769 to 4,465,599 _04194 ECD_04195: ECD_04195 - RpoS stabilzer after DNA damage, anti-RssB factor, at 4,466,272 to 4,466,664 _04195 ECD_04196: ECD_04196 - hypochlorite-responsive transcription factor, at 4,466,657 to 4,467,568 _04196 ECD_04197: ECD_04197 - isoaspartyl dipeptidase, at 4,467,633 to 4,468,805 _04197 Position (kb) 4466 4467Strain fitness (log2 ratio) -2 -1 0 1at 4466.170 kb on + strandat 4466.170 kb on + strandat 4466.171 kb on - strandat 4466.210 kb on + strandat 4466.243 kb on + strandat 4466.244 kb on - strandat 4466.244 kb on - strandat 4466.319 kb on + strand, within ECD_04195at 4466.371 kb on - strand, within ECD_04195at 4466.399 kb on + strand, within ECD_04195at 4466.400 kb on - strand, within ECD_04195at 4466.493 kb on - strand, within ECD_04195at 4466.581 kb on + strand, within ECD_04195at 4466.662 kb on + strandat 4466.663 kb on - strandat 4466.725 kb on + strandat 4466.726 kb on - strandat 4466.726 kb on - strandat 4466.743 kb on - strandat 4466.743 kb on - strandat 4466.743 kb on - strandat 4466.780 kb on + strand, within ECD_04196at 4466.971 kb on - strand, within ECD_04196at 4467.005 kb on - strand, within ECD_04196at 4467.169 kb on + strand, within ECD_04196at 4467.170 kb on - strand, within ECD_04196at 4467.212 kb on - strand, within ECD_04196at 4467.221 kb on + strand, within ECD_04196at 4467.254 kb on + strand, within ECD_04196at 4467.569 kb on + strandat 4467.576 kb on + strandat 4467.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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4,466,170 + +0.0
4,466,170 + -0.6
4,466,171 - -0.2
4,466,210 + +0.1
4,466,243 + +0.3
4,466,244 - +0.3
4,466,244 - +0.9
4,466,319 + ECD_04195 0.12 -0.1
4,466,371 - ECD_04195 0.25 -0.9
4,466,399 + ECD_04195 0.32 -1.8
4,466,400 - ECD_04195 0.33 -0.3
4,466,493 - ECD_04195 0.56 +0.1
4,466,581 + ECD_04195 0.79 -1.6
4,466,662 + +0.8
4,466,663 - +0.5
4,466,725 + -0.4
4,466,726 - +0.8
4,466,726 - +0.1
4,466,743 - -0.4
4,466,743 - -0.7
4,466,743 - -0.3
4,466,780 + ECD_04196 0.13 -0.0
4,466,971 - ECD_04196 0.34 -0.0
4,467,005 - ECD_04196 0.38 -0.9
4,467,169 + ECD_04196 0.56 +0.3
4,467,170 - ECD_04196 0.56 -0.3
4,467,212 - ECD_04196 0.61 +0.9
4,467,221 + ECD_04196 0.62 +0.5
4,467,254 + ECD_04196 0.65 -0.4
4,467,569 + -0.7
4,467,576 + +0.7
4,467,577 - +0.0

Or see this region's nucleotide sequence