Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04194 and ECD_04195 are separated by 672 nucleotides ECD_04195 and ECD_04196 overlap by 8 nucleotides ECD_04196 and ECD_04197 are separated by 64 nucleotides
ECD_04194: ECD_04194 - uncharacterized protein, at 4,464,769 to 4,465,599
_04194
ECD_04195: ECD_04195 - RpoS stabilzer after DNA damage, anti-RssB factor, at 4,466,272 to 4,466,664
_04195
ECD_04196: ECD_04196 - hypochlorite-responsive transcription factor, at 4,466,657 to 4,467,568
_04196
ECD_04197: ECD_04197 - isoaspartyl dipeptidase, at 4,467,633 to 4,468,805
_04197
Position (kb)
4466
4467 Strain fitness (log2 ratio)
-2
-1
0
1 at 4466.170 kb on + strand at 4466.170 kb on + strand at 4466.171 kb on - strand at 4466.210 kb on + strand at 4466.243 kb on + strand at 4466.244 kb on - strand at 4466.244 kb on - strand at 4466.319 kb on + strand, within ECD_04195 at 4466.371 kb on - strand, within ECD_04195 at 4466.399 kb on + strand, within ECD_04195 at 4466.400 kb on - strand, within ECD_04195 at 4466.493 kb on - strand, within ECD_04195 at 4466.581 kb on + strand, within ECD_04195 at 4466.662 kb on + strand at 4466.663 kb on - strand at 4466.725 kb on + strand at 4466.726 kb on - strand at 4466.726 kb on - strand at 4466.743 kb on - strand at 4466.743 kb on - strand at 4466.743 kb on - strand at 4466.780 kb on + strand, within ECD_04196 at 4466.971 kb on - strand, within ECD_04196 at 4467.005 kb on - strand, within ECD_04196 at 4467.169 kb on + strand, within ECD_04196 at 4467.170 kb on - strand, within ECD_04196 at 4467.212 kb on - strand, within ECD_04196 at 4467.221 kb on + strand, within ECD_04196 at 4467.254 kb on + strand, within ECD_04196 at 4467.569 kb on + strand at 4467.576 kb on + strand at 4467.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 4,466,170 + +0.0 4,466,170 + -0.6 4,466,171 - -0.2 4,466,210 + +0.1 4,466,243 + +0.3 4,466,244 - +0.3 4,466,244 - +0.9 4,466,319 + ECD_04195 0.12 -0.1 4,466,371 - ECD_04195 0.25 -0.9 4,466,399 + ECD_04195 0.32 -1.8 4,466,400 - ECD_04195 0.33 -0.3 4,466,493 - ECD_04195 0.56 +0.1 4,466,581 + ECD_04195 0.79 -1.6 4,466,662 + +0.8 4,466,663 - +0.5 4,466,725 + -0.4 4,466,726 - +0.8 4,466,726 - +0.1 4,466,743 - -0.4 4,466,743 - -0.7 4,466,743 - -0.3 4,466,780 + ECD_04196 0.13 -0.0 4,466,971 - ECD_04196 0.34 -0.0 4,467,005 - ECD_04196 0.38 -0.9 4,467,169 + ECD_04196 0.56 +0.3 4,467,170 - ECD_04196 0.56 -0.3 4,467,212 - ECD_04196 0.61 +0.9 4,467,221 + ECD_04196 0.62 +0.5 4,467,254 + ECD_04196 0.65 -0.4 4,467,569 + -0.7 4,467,576 + +0.7 4,467,577 - +0.0
Or see this region's nucleotide sequence