Strain Fitness in Escherichia coli BL21 around ECD_04142

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04141 and ECD_04142 are separated by 11 nucleotidesECD_04142 and ECD_04145 are separated by 791 nucleotides ECD_04141: ECD_04141 - putative MFS transporter, membrane protein, at 4,414,315 to 4,415,532 _04141 ECD_04142: ECD_04142 - GFO/IDH/MOCA family putative oxidoreductase NAD(P)-dependent, at 4,415,544 to 4,416,662 _04142 ECD_04145: ECD_04145 - IS911 protein, at 4,417,454 to 4,417,726 _04145 Position (kb) 4415 4416 4417Strain fitness (log2 ratio) -2 -1 0 1at 4414.623 kb on - strand, within ECD_04141at 4414.626 kb on + strand, within ECD_04141at 4414.913 kb on - strand, within ECD_04141at 4416.181 kb on + strand, within ECD_04142at 4416.223 kb on + strand, within ECD_04142at 4416.259 kb on - strand, within ECD_04142at 4416.430 kb on - strand, within ECD_04142at 4416.500 kb on + strand, within ECD_04142at 4416.578 kb on + strandat 4416.985 kb on + strandat 4416.985 kb on + strandat 4417.002 kb on - strandat 4417.038 kb on + strandat 4417.074 kb on + strandat 4417.090 kb on - strandat 4417.168 kb on + strandat 4417.172 kb on - strandat 4417.172 kb on - strandat 4417.181 kb on + strandat 4417.181 kb on + strandat 4417.182 kb on - strandat 4417.258 kb on + strandat 4417.259 kb on - strandat 4417.296 kb on - strandat 4417.296 kb on - strandat 4417.318 kb on + strandat 4417.326 kb on + strandat 4417.326 kb on + strandat 4417.326 kb on + strandat 4417.365 kb on - strandat 4417.520 kb on + strand, within ECD_04145at 4417.520 kb on + strand, within ECD_04145at 4417.653 kb on + strand, within ECD_04145at 4417.654 kb on - strand, within ECD_04145at 4417.658 kb on - strand, within ECD_04145

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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4,414,623 - ECD_04141 0.25 +1.1
4,414,626 + ECD_04141 0.26 -0.4
4,414,913 - ECD_04141 0.49 +0.6
4,416,181 + ECD_04142 0.57 -0.3
4,416,223 + ECD_04142 0.61 -0.9
4,416,259 - ECD_04142 0.64 +0.2
4,416,430 - ECD_04142 0.79 -1.5
4,416,500 + ECD_04142 0.85 -1.4
4,416,578 + +0.8
4,416,985 + +0.2
4,416,985 + +0.4
4,417,002 - +0.5
4,417,038 + +0.2
4,417,074 + -0.3
4,417,090 - -0.1
4,417,168 + +0.2
4,417,172 - -1.3
4,417,172 - +0.0
4,417,181 + +0.4
4,417,181 + -0.4
4,417,182 - +0.1
4,417,258 + +0.6
4,417,259 - -0.1
4,417,296 - +0.3
4,417,296 - -0.1
4,417,318 + +0.2
4,417,326 + +0.7
4,417,326 + +0.6
4,417,326 + +0.6
4,417,365 - -0.8
4,417,520 + ECD_04145 0.24 +0.1
4,417,520 + ECD_04145 0.24 -0.1
4,417,653 + ECD_04145 0.73 +0.3
4,417,654 - ECD_04145 0.73 -2.3
4,417,658 - ECD_04145 0.75 +1.5

Or see this region's nucleotide sequence