Strain Fitness in Escherichia coli BL21 around ECD_03689

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03687 and ECD_03688 overlap by 1 nucleotidesECD_03688 and ECD_03689 are separated by 83 nucleotidesECD_03689 and ECD_03690 are separated by 54 nucleotides ECD_03687: ECD_03687 - site-specific tyrosine recombinase, at 3,886,564 to 3,887,460 _03687 ECD_03688: ECD_03688 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 3,887,460 to 3,888,176 _03688 ECD_03689: ECD_03689 - DNA-dependent ATPase I and helicase II, at 3,888,260 to 3,890,422 _03689 ECD_03690: ECD_03690 - hypothetical protein, at 3,890,477 to 3,891,379 _03690 Position (kb) 3888 3889 3890 3891Strain fitness (log2 ratio) -2 -1 0 1at 3887.311 kb on - strand, within ECD_03687at 3887.388 kb on + strandat 3887.389 kb on - strandat 3887.422 kb on + strandat 3887.459 kb on - strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.524 kb on - strandat 3887.567 kb on + strand, within ECD_03688at 3887.824 kb on + strand, within ECD_03688at 3887.825 kb on - strand, within ECD_03688at 3887.905 kb on - strand, within ECD_03688at 3887.960 kb on + strand, within ECD_03688at 3887.964 kb on + strand, within ECD_03688at 3887.964 kb on + strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.011 kb on - strand, within ECD_03688at 3888.172 kb on + strandat 3888.173 kb on - strandat 3888.189 kb on + strandat 3888.189 kb on + strandat 3888.189 kb on + strandat 3888.191 kb on + strandat 3888.191 kb on + strandat 3888.191 kb on + strandat 3888.193 kb on + strandat 3888.193 kb on + strandat 3888.193 kb on + strandat 3888.195 kb on + strandat 3888.239 kb on + strandat 3890.233 kb on + strandat 3890.268 kb on - strandat 3890.345 kb on - strandat 3890.400 kb on - strandat 3890.420 kb on + strandat 3890.420 kb on + strandat 3890.420 kb on + strandat 3890.421 kb on - strandat 3890.478 kb on + strandat 3890.478 kb on + strandat 3890.478 kb on + strandat 3890.479 kb on - strandat 3890.479 kb on - strandat 3890.479 kb on - strandat 3890.479 kb on - strandat 3890.512 kb on + strandat 3890.579 kb on + strand, within ECD_03690at 3890.579 kb on + strand, within ECD_03690at 3890.580 kb on - strand, within ECD_03690at 3890.580 kb on - strand, within ECD_03690at 3890.592 kb on + strand, within ECD_03690at 3890.592 kb on + strand, within ECD_03690at 3890.592 kb on + strand, within ECD_03690at 3890.593 kb on - strand, within ECD_03690at 3890.638 kb on - strand, within ECD_03690at 3890.684 kb on + strand, within ECD_03690at 3890.907 kb on + strand, within ECD_03690at 3890.907 kb on + strand, within ECD_03690at 3890.908 kb on - strand, within ECD_03690at 3890.908 kb on - strand, within ECD_03690at 3890.913 kb on + strand, within ECD_03690at 3890.913 kb on + strand, within ECD_03690at 3890.914 kb on - strand, within ECD_03690at 3890.914 kb on - strand, within ECD_03690at 3890.914 kb on - strand, within ECD_03690at 3890.914 kb on - strand, within ECD_03690at 3890.914 kb on - strand, within ECD_03690at 3890.915 kb on + strand, within ECD_03690at 3890.915 kb on + strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.916 kb on - strand, within ECD_03690at 3890.935 kb on + strand, within ECD_03690at 3890.936 kb on - strand, within ECD_03690at 3890.936 kb on - strand, within ECD_03690at 3890.937 kb on + strand, within ECD_03690at 3891.052 kb on - strand, within ECD_03690at 3891.190 kb on - strand, within ECD_03690at 3891.190 kb on - strand, within ECD_03690at 3891.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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3,887,311 - ECD_03687 0.83 +0.7
3,887,388 + -1.4
3,887,389 - +0.2
3,887,422 + -2.5
3,887,459 - +1.2
3,887,523 + +0.2
3,887,523 + +1.1
3,887,523 + -0.1
3,887,523 + +0.2
3,887,524 - +0.1
3,887,567 + ECD_03688 0.15 +0.5
3,887,824 + ECD_03688 0.51 -0.4
3,887,825 - ECD_03688 0.51 +0.3
3,887,905 - ECD_03688 0.62 -0.4
3,887,960 + ECD_03688 0.70 -0.2
3,887,964 + ECD_03688 0.70 +0.5
3,887,964 + ECD_03688 0.70 +1.6
3,887,965 - ECD_03688 0.70 -0.6
3,887,965 - ECD_03688 0.70 +0.8
3,887,965 - ECD_03688 0.70 +0.5
3,888,010 + ECD_03688 0.77 -0.1
3,888,010 + ECD_03688 0.77 -0.8
3,888,010 + ECD_03688 0.77 +0.3
3,888,010 + ECD_03688 0.77 +0.7
3,888,011 - ECD_03688 0.77 +0.2
3,888,172 + +0.5
3,888,173 - -1.9
3,888,189 + -0.6
3,888,189 + -0.1
3,888,189 + +0.3
3,888,191 + -0.3
3,888,191 + -0.5
3,888,191 + -0.4
3,888,193 + +0.2
3,888,193 + +1.3
3,888,193 + -0.5
3,888,195 + +0.1
3,888,239 + -0.4
3,890,233 + -0.5
3,890,268 - -0.2
3,890,345 - -0.8
3,890,400 - +0.7
3,890,420 + -0.3
3,890,420 + -0.3
3,890,420 + -0.2
3,890,421 - +0.7
3,890,478 + +0.1
3,890,478 + +0.2
3,890,478 + -0.1
3,890,479 - -0.4
3,890,479 - +0.2
3,890,479 - -0.0
3,890,479 - -0.3
3,890,512 + -0.6
3,890,579 + ECD_03690 0.11 -0.7
3,890,579 + ECD_03690 0.11 -0.1
3,890,580 - ECD_03690 0.11 +0.9
3,890,580 - ECD_03690 0.11 +0.3
3,890,592 + ECD_03690 0.13 +0.2
3,890,592 + ECD_03690 0.13 +0.3
3,890,592 + ECD_03690 0.13 -0.4
3,890,593 - ECD_03690 0.13 -0.3
3,890,638 - ECD_03690 0.18 +0.2
3,890,684 + ECD_03690 0.23 +0.1
3,890,907 + ECD_03690 0.48 +0.4
3,890,907 + ECD_03690 0.48 -0.9
3,890,908 - ECD_03690 0.48 +0.8
3,890,908 - ECD_03690 0.48 -0.9
3,890,913 + ECD_03690 0.48 +0.1
3,890,913 + ECD_03690 0.48 -0.3
3,890,914 - ECD_03690 0.48 +0.6
3,890,914 - ECD_03690 0.48 -0.3
3,890,914 - ECD_03690 0.48 -0.1
3,890,914 - ECD_03690 0.48 +0.9
3,890,914 - ECD_03690 0.48 -0.1
3,890,915 + ECD_03690 0.49 -1.1
3,890,915 + ECD_03690 0.49 +0.4
3,890,916 - ECD_03690 0.49 -0.0
3,890,916 - ECD_03690 0.49 -1.1
3,890,916 - ECD_03690 0.49 +0.5
3,890,916 - ECD_03690 0.49 -0.5
3,890,916 - ECD_03690 0.49 +0.2
3,890,916 - ECD_03690 0.49 +0.3
3,890,916 - ECD_03690 0.49 -0.1
3,890,916 - ECD_03690 0.49 -0.3
3,890,916 - ECD_03690 0.49 +0.5
3,890,935 + ECD_03690 0.51 -0.4
3,890,936 - ECD_03690 0.51 +0.3
3,890,936 - ECD_03690 0.51 -0.7
3,890,937 + ECD_03690 0.51 +0.8
3,891,052 - ECD_03690 0.64 +0.1
3,891,190 - ECD_03690 0.79 -1.8
3,891,190 - ECD_03690 0.79 -0.0
3,891,398 - +0.1

Or see this region's nucleotide sequence